Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3420 ATGTCTCGAAAGAGTGGTTCGTTCTCAACTAGCCCTACTCGCTCAAGGAATAAGACAACTGGGTTTTCACCTCCTCCTAGACCATTTCATCCTATGCGCCCCACCACCACGGGAGAGCGAACTGTGAAATCATTGCGACTTTCAAAGGCATTGACAGTGCCTGAAACAACAACAGTCTATGAAGCTTGTCGTCGAATGGCTGTTCGCAGAGTAGATGCTCTGTTACTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGGATATATTAACAAGAGTTATTGCGCGTGAAGTTAATCTTGAAGACACACCTTGTTCCAAGGTTATGACAAGGAATCCAGTATTCGTCCTTACCGACACTCTTGCCGTCGAAGCACTCCAAAAGATGGTGCAAGGGAAATTCAGACATTTACCGGTAGTGGAGAATGGAGAAGTGGTTGCTATCCTTGACATAGCCAAGTGTTTATATGATGCCATTGCTCGTATGGAAAGGGCAGCTGAGAAAGGAAAGGCAATTGCAGCAGCTGTTGAAGGTATCGACAAACACTGGGGAGCATCTGCCTCTGGATCCAATTCATCATTCATTGATACTCTTCGGGAGCAAATATTTAAGCCATCATTGTCTACAATCATTCCTGAGAATTCAAAGGTTGTTACAGTTTCACCAACAGATACAGTTTTGACAACAACAAAAAAGATGCTTGAACTTCGTGCAAGTGCTGCTATTGTGACGGTTGATGACAAACCTTGTGGTATCCTTACTTCAAAGGATATCTTGATGCGGGTTATTGCACAAAATCTCTCCGCATCTTCAACTCTTGTTGAGACGGTCATGACTGCAAATCCAGAATGTGCAATAATCGATACACCAATTGTTGATGCGCTTCACATAATGCATAATGGAAAATTCTTGCATCTTCCTGTGGTTGATAGAGATGGCATTGTTGTTGCCACGGTTGATGTGATTAATATCACTCATGCTGCTGTGGCCACAGCTAGTCAGGTTGGGAATACTGCTAATCTAAACAATGAAACTGCCAACTCCATGATACAAAAGTTTTGGGATTCGGCCATGGCCTTGACTTCAAATGAAGAAGAAGAAGATTCACAAAGCGACATTTCCTTGAAAATGATTTCCGAGGGAGGAGAAACAGGGAGATCCATTCCTTATAATGCGTCAAGTGTGCAGACCACATTTTCCTTCAAACTACAAGATAAGAAGGGTAGATTACATAGATTCACATGTGATACTCGGAGCTTGTCAGAGATTATAACTTCCATCATTCAGAGAGTTGGCGATGATATCGACCCCAATAACCTGCCCCACATTTTGTATGAAGATGAAGAACACGATCAAGTTGTATTGGCTTCAGATAGTGATCTCGCTGCAGCTGTCGACCATGCAAAGACGGCTGGTTTGAAGGGATTGAGATTGCACTTAGACTACTCAGGAACACGTGGTTACGGAACAGAAGCAAATTTAGGTTTGGAATATGCTGAGTCAGAAGCATGGGCCTCGGCCTATCATACCGTTGCAGCTGGAGCTGCAATTGTTGCTGCTTTAGGTCTATTAGCGTTCTTCAGGCTAAAGCCATGA 1605 0.4336 MSRKSGSFSTSPTRSRNKTTGFSPPPRPFHPMRPTTTGERTVKSLRLSKALTVPETTTVYEACRRMAVRRVDALLLTDSNALLCGILTDKDILTRVIAREVNLEDTPCSKVMTRNPVFVLTDTLAVEALQKMVQGKFRHLPVVENGEVVAILDIAKCLYDAIARMERAAEKGKAIAAAVEGIDKHWGASASGSNSSFIDTLREQIFKPSLSTIIPENSKVVTVSPTDTVLTTTKKMLELRASAAIVTVDDKPCGILTSKDILMRVIAQNLSASSTLVETVMTANPECAIIDTPIVDALHIMHNGKFLHLPVVDRDGIVVATVDVINITHAAVATASQVGNTANLNNETANSMIQKFWDSAMALTSNEEEEDSQSDISLKMISEGGETGRSIPYNASSVQTTFSFKLQDKKGRLHRFTCDTRSLSEIITSIIQRVGDDIDPNNLPHILYEDEEHDQVVLASDSDLAAAVDHAKTAGLKGLRLHLDYSGTRGYGTEANLGLEYAESEAWASAYHTVAAGAAIVAALGLLAFFRLKP* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3420 534 CDD CBS_pair_MUG70_1 47 163 - -
Mtr8g3420 534 SMART cbs_1 219 266 IPR000644 -
Mtr8g3420 534 SMART cbs_1 284 332 IPR000644 -
Mtr8g3420 534 SMART cbs_1 115 159 IPR000644 -
Mtr8g3420 534 SMART cbs_1 49 97 IPR000644 -
Mtr8g3420 534 Pfam PB1 domain 401 484 IPR000270 GO:0005515
Mtr8g3420 534 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 23 522 IPR034896 -
Mtr8g3420 534 ProSiteProfiles CBS domain profile. 112 170 IPR000644 -
Mtr8g3420 534 ProSiteProfiles CBS domain profile. 213 273 IPR000644 -
Mtr8g3420 534 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 23 522 - -
Mtr8g3420 534 ProSiteProfiles CBS domain profile. 281 338 IPR000644 -
Mtr8g3420 534 Pfam CBS domain 110 152 IPR000644 -
Mtr8g3420 534 Pfam CBS domain 48 95 IPR000644 -
Mtr8g3420 534 Pfam CBS domain 217 263 IPR000644 -
Mtr8g3420 534 Pfam CBS domain 277 322 IPR000644 -
Mtr8g3420 534 Gene3D - 190 343 IPR046342 -
Mtr8g3420 534 Gene3D - 32 177 IPR046342 -
Mtr8g3420 534 CDD PB1_MUG70 402 486 - -
Mtr8g3420 534 SUPERFAMILY CAD & PB1 domains 396 488 - -
Mtr8g3420 534 CDD CBS_pair_MUG70_2 217 333 - -
Mtr8g3420 534 MobiDBLite consensus disorder prediction 1 41 - -
Mtr8g3420 534 ProSiteProfiles CBS domain profile. 46 106 IPR000644 -
Mtr8g3420 534 SUPERFAMILY CBS-domain pair 39 155 IPR046342 -
Mtr8g3420 534 MobiDBLite consensus disorder prediction 1 22 - -
Mtr8g3420 534 SUPERFAMILY CBS-domain pair 218 332 IPR046342 -
Mtr8g3420 534 SMART PB1_new 401 486 IPR000270 GO:0005515
Mtr8g3420 534 ProSiteProfiles PB1 domain profile. 399 486 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3420 Mtr-Chr8 44783251 44789245 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3420 - - gmx:100783514 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3420 8 44783251 44789245 Mtr8g3420 8 44783251 44789245 ECH
Mtr3g3502 3 48879626 48887633 Mtr8g3420 8 44783251 44789245 PCT