Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo10g01866 | ATGGCAAGTCAAAGCGGTACCTCTCGAAGGAGTATTTCGTCGACGAGGAAAGCCTCTGAATCAGGGGTGCCGAGAAAATCAATTTCGTCTTCGCGACCTTTGGCATTGGCAGGAGAGCGGACAGTGAAATCATTGCGACTTACAAAGGCCCTGACAGTACCTGAAACAACAACTGTCTATGAAGCTTGCCGTCGGATGGCTGCCCGTAGAGTGGATGCTCTATTACTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGGATATAGCAACAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCAGTTTCCAAAGTCATGACTAGGAATCCGGTATTTGTCCTTTCTGAAACTCTTGCTGCAGAAGCCCTCCAAAAGATGGTGCAAGGGAAATTCAGACATTTGCCTGTGGTGGAGAATGGAGAAGTTTTGGCTTTACTAGACATAGCAAAGTGTTTGCATGATGCCATTGCCCGTATGGAAAGGGCAGCTGAGAAAGGAAAGGCAATTGCAGCAGCTGTTGAAGGAGTTGAAAAACACTGGGGAACATCAGATTCCAATACATCATTCATTGAGACTCTTCGGGAGCAGATATTCAAGCCATCATTGTCTACAATCATTCCTGAGAATTCAAAGCTTGTAACAGTATCACCAACAGACTCAGTTCTGACAACAACAAAGAAGATGGTTGAATTTCGTGAAAGTTGTGCTGTTGTGACAGTTAATGGCAAACCTCATGGCATCTTTACTTCAAAGGATATCTTGTTGCGGGTAATTGCACAAAATCTTTCTCCAGAATCAACTCCCATTGAGAAGGTCATGACTCCAAATCCAGAATGCGTAGTAATTGATACACCCATTGTTGATGCACTTCACACTATGCATGATGGAAAATTTTTGCATCTTCCTGTGATTGATAGAGGTGGTAGTGTAGTTGCTGTGGTTGATGTGATTCATGTCACTCATGCTGCTGTGGCGACAGTAAGTCAGGTTGGGAATAATGAAGCTGCCACCACCTTGATGCAAAGATTTTGGGATTCAGCCATGGCCTTAAGTCCAAATGATGATGACGATGATACTCGAAGTGAGAGTTCCTTGAAAGTGGCTTCTGAGGGAGGAGAAACGGGGAGATCCATTCCTTATCTATCGTCAAGCATGCCCAATACATTTTCCTTCAAAATACAAGATAAGAAGGGGAGAATGCACAGATTCACGTGTGATACCCGGAGCATGACGGAGGTTATAACTTCAATCCTTCAGAGACTTGGTGATGAAATTGATCCTAACAACATACCCCAAATTCTGTATGAGGACGAAGATCATGATAAAGTTGTATTGGCCTCAGACGAAGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGGGCTTGAAATTGCATTTAGACCATGCAGGACTACGTGGTGGTAATGTGAAAGGTTCTCGTACAGGAAGTTATGCTTATTCAGATGCATGGGCCTCAGCATATAGTGCTGCTGCTGCTGGAGCTGCACTCGTTGCTGGCTTAGGCATATTAACGTACTTGAAGCGAGTTTGA | 1581 | 0.4402 | MASQSGTSRRSISSTRKASESGVPRKSISSSRPLALAGERTVKSLRLTKALTVPETTTVYEACRRMAARRVDALLLTDSNALLCGILTDKDIATRVIAKEINLEETPVSKVMTRNPVFVLSETLAAEALQKMVQGKFRHLPVVENGEVLALLDIAKCLHDAIARMERAAEKGKAIAAAVEGVEKHWGTSDSNTSFIETLREQIFKPSLSTIIPENSKLVTVSPTDSVLTTTKKMVEFRESCAVVTVNGKPHGIFTSKDILLRVIAQNLSPESTPIEKVMTPNPECVVIDTPIVDALHTMHDGKFLHLPVIDRGGSVVAVVDVIHVTHAAVATVSQVGNNEAATTLMQRFWDSAMALSPNDDDDDTRSESSLKVASEGGETGRSIPYLSSSMPNTFSFKIQDKKGRMHRFTCDTRSMTEVITSILQRLGDEIDPNNIPQILYEDEDHDKVVLASDEDLAAAVDHARTAGLKGLKLHLDHAGLRGGNVKGSRTGSYAYSDAWASAYSAAAAGAALVAGLGILTYLKRV | 526 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo10g01866 | 526 | SUPERFAMILY | CAD & PB1 domains | 386 | 476 | - | - | |
| Pumo10g01866 | 526 | MobiDBLite | consensus disorder prediction | 371 | 387 | - | - | |
| Pumo10g01866 | 526 | CDD | PB1_MUG70 | 395 | 479 | - | - | |
| Pumo10g01866 | 526 | ProSiteProfiles | CBS domain profile. | 211 | 271 | IPR000644 | - | |
| Pumo10g01866 | 526 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Pumo10g01866 | 526 | SMART | cbs_1 | 282 | 330 | IPR000644 | - | |
| Pumo10g01866 | 526 | SMART | cbs_1 | 49 | 97 | IPR000644 | - | |
| Pumo10g01866 | 526 | SMART | cbs_1 | 115 | 159 | IPR000644 | - | |
| Pumo10g01866 | 526 | SMART | cbs_1 | 217 | 264 | IPR000644 | - | |
| Pumo10g01866 | 526 | ProSiteProfiles | PB1 domain profile. | 392 | 479 | IPR000270 | GO:0005515 | |
| Pumo10g01866 | 526 | Gene3D | - | 394 | 476 | - | - | |
| Pumo10g01866 | 526 | SMART | PB1_new | 394 | 479 | IPR000270 | GO:0005515 | |
| Pumo10g01866 | 526 | MobiDBLite | consensus disorder prediction | 356 | 387 | - | - | |
| Pumo10g01866 | 526 | Pfam | PB1 domain | 394 | 478 | IPR000270 | GO:0005515 | |
| Pumo10g01866 | 526 | SUPERFAMILY | CBS-domain pair | 217 | 329 | IPR046342 | - | |
| Pumo10g01866 | 526 | ProSiteProfiles | CBS domain profile. | 279 | 340 | IPR000644 | - | |
| Pumo10g01866 | 526 | ProSiteProfiles | CBS domain profile. | 46 | 105 | IPR000644 | - | |
| Pumo10g01866 | 526 | Gene3D | - | 25 | 177 | IPR046342 | - | |
| Pumo10g01866 | 526 | Gene3D | - | 188 | 341 | IPR046342 | - | |
| Pumo10g01866 | 526 | PANTHER | AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT | 20 | 463 | - | - | |
| Pumo10g01866 | 526 | ProSiteProfiles | CBS domain profile. | 112 | 170 | IPR000644 | - | |
| Pumo10g01866 | 526 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Pumo10g01866 | 526 | CDD | CBS_pair_MUG70_1 | 47 | 163 | - | - | |
| Pumo10g01866 | 526 | SUPERFAMILY | CBS-domain pair | 39 | 156 | IPR046342 | - | |
| Pumo10g01866 | 526 | Pfam | CBS domain | 108 | 152 | IPR000644 | - | |
| Pumo10g01866 | 526 | Pfam | CBS domain | 47 | 94 | IPR000644 | - | |
| Pumo10g01866 | 526 | Pfam | CBS domain | 276 | 325 | IPR000644 | - | |
| Pumo10g01866 | 526 | Pfam | CBS domain | 215 | 261 | IPR000644 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo10g01866 | Pumo-Chr10 | 24674269 | 24680615 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo10g01866 | - | - | gmx:100785816 | 882.863 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pumo10g01866 | 10 | 24674269 | 24680615 | Pumo10g01866 | 10 | 24674269 | 24680615 | ECH | |
| Pumo10g01866 | 10 | 24674269 | 24680615 | Pumo6g00531 | 6 | 6642388 | 6648092 | PCT |