Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00968 ATGGAGAAGCCATCGTCGTCGCTAAAATCGAGCACGAAGGTGAAAGCTTCGAGCGATGCGAACACCAGCTTGAGTATGCTGAATGAGGATATTCTTCAGAACATTCTAGCGAGGCTTCCTGCTGTACCATTCGCTTCCGCAGCGTGCGTCAGCAAAGCATGGAACTCTCTCTGCAATCGCATCCTCTCTCGTCCCAAACTCTCTTCTGCGCTCTCTCTCAACCCTTCGCTCCCCGATGCTGTCAACGAGGTTGTGCAAAGGGTTCTGTCGGAGCCAATTCGACCACATTTTGCTATTGCCAATACTGGAACTGGATTCTGCACTTCCAAGACTCTGCGGCTTATTAGACAGTCATTGGGATCTAATATTCCCGTTATTGTTACCGTGGCAAATGGTATTATTGGAAGGGATGCTGTTACTGATGAGTTTAAAGAGGTCAAATGGGGTGCCCTTTTTAGTGGCTTTGGTGAGGAAACATATGCAAAGTCTATAAACGAAGGCTTAGTTTTGACTGTTGGCTACTTGCCGGGATTGAAAGTCGAAGCTGTGCCGTTGCGGCGGCCACAAAAGTCATCTCAAGCACCTTGGGTCGACAATTTTATTAAGGATATTAAGGAATATTCAGCCATTGCCTCCGGTCGCCAGTTCCCTGTTGGGATTATATTGTTTGGAGAAGCAAGCAGTGACATGAAATTGGTTCTGGAGAAATTGGATTATGCTATGCCATTGGACACTATCGTTGTGGGTGATGAGAGAGGCTCCTTTGACTTTGTACCCAAAAGTGGGAATGATTCTAGAATCATTTGTAGTAAAAGAGGAAACGTAGAAGCTGTTGCTCTGGTATTTGCTCAGGACAGAGATAGGTCTTTGGGAACTATTAGGTTTCATGTTGCATTGTCAGATGGTGTTTCAACTGTGGGTCCCAGATACAAGGCAGCCTCAGTTAGAGCAAACTCCACTGATTGTGCAACATGGCTAACTGCTAGGAGGGAAGGGCAACAAGAACTTCTTGATGGTCAGAGTATTCTACTTGATATCAATAATTTGCTGGAGAATCATATTGAATCTCCTGATTTGTACATCGGGGTAATTAAACATAGGAAATTCTCCACGGGAGCAGAGAAGCCAATGCCAAGAACCTGTGTTGCATATCATGGAATTGTGGGAGGTGATGAAGAGTATCTGTATGTGGACGGCATCGGCATAAAAACAGGAGATTTCTTTCAATTCTACTTTTCAGATCCCAACACTGCCTTAGCTTCATTAACCAAGGTCCATGAAGCCCTCAAGAATATTACATTGGAAAGAAATTCCAAGAGTTGCAAGGGTGATGAAGACAATACTGCCAATGTTTTTGGAGGTTTAATTTTTGCTTGTTACGGCCGGGGAGAATCCTTCTTTGGACGTCCCAATGTTGATAGCTCCCCTTTCTTGGAGAATTTTCCAGGAGTGCCCTTTTCTGGAATATTTTGTGGTGGAGAAATGGTGCGCCCCTGTACCACTGTGATTGGTCAATGTGAAGGAGCAAGCCCCTCTAGTTGTTGTCTGCATGTCTACAGCACTGTCTACTTGGCAATGTCTTATACTCCTCCCTCTGTGGAAGATTAG 1608 0.4496 MEKPSSSLKSSTKVKASSDANTSLSMLNEDILQNILARLPAVPFASAACVSKAWNSLCNRILSRPKLSSALSLNPSLPDAVNEVVQRVLSEPIRPHFAIANTGTGFCTSKTLRLIRQSLGSNIPVIVTVANGIIGRDAVTDEFKEVKWGALFSGFGEETYAKSINEGLVLTVGYLPGLKVEAVPLRRPQKSSQAPWVDNFIKDIKEYSAIASGRQFPVGIILFGEASSDMKLVLEKLDYAMPLDTIVVGDERGSFDFVPKSGNDSRIICSKRGNVEAVALVFAQDRDRSLGTIRFHVALSDGVSTVGPRYKAASVRANSTDCATWLTARREGQQELLDGQSILLDINNLLENHIESPDLYIGVIKHRKFSTGAEKPMPRTCVAYHGIVGGDEEYLYVDGIGIKTGDFFQFYFSDPNTALASLTKVHEALKNITLERNSKSCKGDEDNTANVFGGLIFACYGRGESFFGRPNVDSSPFLENFPGVPFSGIFCGGEMVRPCTTVIGQCEGASPSSCCLHVYSTVYLAMSYTPPSVED 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00968 535 SUPERFAMILY F-box domain 22 59 IPR036047 GO:0005515
Vian4g00968 535 Pfam FIST C domain 401 496 IPR019494 -
Vian4g00968 535 SMART fbox_2 27 67 IPR001810 GO:0005515
Vian4g00968 535 SMART FIST_C_2 342 498 IPR019494 -
Vian4g00968 535 Pfam FIST N domain 110 316 IPR013702 -
Vian4g00968 535 PANTHER F-BOX ONLY PROTEIN 22 17 530 - -
Vian4g00968 535 Pfam F-box domain 24 62 IPR001810 GO:0005515
Vian4g00968 535 Gene3D - 6 62 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00968 - - gmx:100815778 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00968 4 14274320 14284647 Vian4g00968 4 14274320 14284647 ECH
Vian4g00968 4 14274320 14284647 Vian1g03796 1 61010074 61016315 PCT