Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g01954 | ATGGCAAGTCAAACCGGTGCCTCTCGAAGGAGTATTTCCTCGACGAAGAAAGCCTCCGAATCAGGAGTGTCTCACGTTACTTCTCGAAAATCAATTACCTCTTTCCCACCTGTGGCATTAGCAGGAGAGCGGACAGTGAAATCATTGCGGCTTACAAAGGCCCTAACAGTACCTGAAACAACAACCATCTATGAAGCATGTCGTCGAATGGCTGCCCGTAGAGTGGATGCTTTATTACTAACTGATTCTAATGCTTTACTCTGTGGAATCCTCACGGACAAGGATATAGCATCAAGAGTTATTGCCAAAGAGATTAACATTGAAAACACACCAGTTTCCAAAGTCATGACTAGGAATCCAGTATTTGTCCTTTCTGAAACTCTTGCTGCGGAAGCCCTTCAAAAGATGGTGCACGGGAGATTCAGACATTTACCTGTGGTGGAGAATGGAGAAGTTTTGGCTTTACTAGACATAGCAAAGTGTTTGCATGATGCCATTGCCCGTATGGAAAGGGCAGCTGAGAAAGGAAAAGCAATTGCAGCAGCCGTTGAAGGCGTTGAAAAACACTGGGGAACATCAGAGTCCAATACATCATTCATTGAAACTCTTCGGGAGCAAATATTCAAGCCATCATTGTCTACAATCATTTCTGAGAATTCAAAGCTTGTAACAGTATCACCAACAGACTCGGTTCTGACAACAACAAAGAAGATGGTTGAATTTCATGAGAGTTGTGCTGTTGTGACAGTTAATGACAAACCTCGTGGCATCTTTACTTCGAAAGATATCTTGTTGCGGGTAATTGCACAAAATCTTTCTCCTGAATCAACTCCCATTGAGAAGGTCATGACTCCAAATCCAGAATGTGTAGTAATTGATACGCCCATTGTTGATGCACTTCACACTATGCATGACGGAAAATTTTTGCATCTTCCTGTGATTGATAGAGATGGCAGTGTAGTTGCTGTGGTCGATGTGATCCATGTTACTCATGCTGCTGTGGCGACAGTAAGTCAGGTTGGGAATAATGAAGCTGCAACCACCTTGATGCAAAGATTTTGGGATTCAGCCATGGGCTTAACTCCAAATGATGATGATGACGATACACGAAGTGACAGTTCCTTGAAATTGGCTTCTGATGGAGGAGAAACGGGGAGGTCCATTCCTTATCTTTCATCAAGCATGGCTAATACATTTTCCTTCAAAATACAAGATAAAAAGGGCAGAATGCACAGATTCACATGTGATACCCGGAGCATAAAGGAGGTTATAACTTCAATCCTTCAGAGACTTGGTGATGATATTGATCCTAAAAATATACCTCAAATTTTGTATGAAGATGAAGATCACGATAAAGTTGTATTGGCTTCAGACAGTGATCTTGCAGTTGCTGTGGATCACGCAAAGACAGCTGGTTTGAAGGGGTTGAAATTGCATTTAGACTACGCAGGACCACCGGGTAATGTGAAAAGTTCTCGTTCAGGAAGTTATGCTTACTCAGATGCATGGGCCTCTGCATATAGTGCTGCTGCAGCTGGAGCTGCACTTGTTGCTGGCTTAGGCATATTAACGTACTTGAAGCGAGTTTGA | 1590 | 0.4283 | MASQTGASRRSISSTKKASESGVSHVTSRKSITSFPPVALAGERTVKSLRLTKALTVPETTTIYEACRRMAARRVDALLLTDSNALLCGILTDKDIASRVIAKEINIENTPVSKVMTRNPVFVLSETLAAEALQKMVHGRFRHLPVVENGEVLALLDIAKCLHDAIARMERAAEKGKAIAAAVEGVEKHWGTSESNTSFIETLREQIFKPSLSTIISENSKLVTVSPTDSVLTTTKKMVEFHESCAVVTVNDKPRGIFTSKDILLRVIAQNLSPESTPIEKVMTPNPECVVIDTPIVDALHTMHDGKFLHLPVIDRDGSVVAVVDVIHVTHAAVATVSQVGNNEAATTLMQRFWDSAMGLTPNDDDDDTRSDSSLKLASDGGETGRSIPYLSSSMANTFSFKIQDKKGRMHRFTCDTRSIKEVITSILQRLGDDIDPKNIPQILYEDEDHDKVVLASDSDLAVAVDHAKTAGLKGLKLHLDYAGPPGNVKSSRSGSYAYSDAWASAYSAAAAGAALVAGLGILTYLKRV | 529 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g01954 | 529 | SMART | cbs_1 | 221 | 268 | IPR000644 | - | |
| Phco7g01954 | 529 | SMART | cbs_1 | 119 | 163 | IPR000644 | - | |
| Phco7g01954 | 529 | SMART | cbs_1 | 53 | 101 | IPR000644 | - | |
| Phco7g01954 | 529 | SMART | cbs_1 | 286 | 334 | IPR000644 | - | |
| Phco7g01954 | 529 | Pfam | PB1 domain | 398 | 481 | IPR000270 | GO:0005515 | |
| Phco7g01954 | 529 | CDD | PB1_MUG70 | 399 | 483 | - | - | |
| Phco7g01954 | 529 | PANTHER | AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT | 17 | 468 | - | - | |
| Phco7g01954 | 529 | Pfam | CBS domain | 51 | 99 | IPR000644 | - | |
| Phco7g01954 | 529 | Pfam | CBS domain | 112 | 156 | IPR000644 | - | |
| Phco7g01954 | 529 | Pfam | CBS domain | 219 | 265 | IPR000644 | - | |
| Phco7g01954 | 529 | Pfam | CBS domain | 280 | 329 | IPR000644 | - | |
| Phco7g01954 | 529 | ProSiteProfiles | CBS domain profile. | 283 | 344 | IPR000644 | - | |
| Phco7g01954 | 529 | SUPERFAMILY | CBS-domain pair | 221 | 333 | IPR046342 | - | |
| Phco7g01954 | 529 | ProSiteProfiles | CBS domain profile. | 216 | 275 | IPR000644 | - | |
| Phco7g01954 | 529 | SMART | PB1_new | 398 | 483 | IPR000270 | GO:0005515 | |
| Phco7g01954 | 529 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Phco7g01954 | 529 | Gene3D | - | 397 | 480 | - | - | |
| Phco7g01954 | 529 | ProSiteProfiles | CBS domain profile. | 116 | 174 | IPR000644 | - | |
| Phco7g01954 | 529 | ProSiteProfiles | PB1 domain profile. | 396 | 483 | IPR000270 | GO:0005515 | |
| Phco7g01954 | 529 | MobiDBLite | consensus disorder prediction | 360 | 383 | - | - | |
| Phco7g01954 | 529 | ProSiteProfiles | CBS domain profile. | 50 | 107 | IPR000644 | - | |
| Phco7g01954 | 529 | SUPERFAMILY | CAD & PB1 domains | 390 | 480 | - | - | |
| Phco7g01954 | 529 | SUPERFAMILY | CBS-domain pair | 43 | 160 | IPR046342 | - | |
| Phco7g01954 | 529 | Gene3D | - | 21 | 181 | IPR046342 | - | |
| Phco7g01954 | 529 | Gene3D | - | 191 | 345 | IPR046342 | - | |
| Phco7g01954 | 529 | CDD | CBS_pair_MUG70_1 | 51 | 167 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g01954 | Phco-Chr7 | 32732006 | 32736851 | Dispersed/Transposed |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco7g01954 | 7 | 32732006 | 32736851 | Phco7g01954 | 7 | 32732006 | 32736851 | ECH | |
| Phco7g01954 | 7 | 32732006 | 32736851 | Phco4g03252 | 4 | 53168820 | 53174931 | PCT |