Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3319 ATGACTAGTCGAAGGAGTATTTCATCTTCTAGAAGAGCCTCTGAGTCTGCAGTAGGAGCAGGAGCAGTTCGAAAATCTCTTTCGATTTCGCGCCATATGGGATTAACAGGAGAGCGGACAGTGAAATCGTTGCGTCTTTCAAAGGCCTTGACAGTGCCCGAAACAACAACTGTATATGAAGCTTGTCGACGGATGGCTGCCCGTAGGGTGGATGCGCTGTTACTAACTGATTCTAATGGTTTGCTTTGTGGAATCCTCACAGACAAGGATATAGCAAGAAAAGTTGTTGCCCAAGAGATTAATCCTGAAGACACACCTGCTTCCAAGGTTATGACAAGAAATCCGGTATTTGTCCTTTCCGAAACTCTTGCTGTGGAAGCTCTCCAAAAGATGGTGCAAGGGAAATTTAGGCATCTACCTGTGGTGGAGAATGGGGAAGTTTTGGCTTTACTCGACATAGCAAAGTGTTTGCATGATGCCACTGCACGTATGGAAAGGGCTGCAGAGAAAGGAAAAGCAATTGCAGCAGCTGTTGAAGGGGTTGAAAAACATTGGGGATCAACTAATTCTGACTCTAATTCATCATTTATTGAGGCCCTTCGGGAAAAGATATTCAAACCATCACTGTCCACAATCATTCCTGAGAATTCAAAGATGGTGACAGTTTCACCAACAGACTCGGTTCTGAAAACAACAAAAACGATGGTTGAACTTCATGCAAGTTGTGCTGTTGTGACTGTTGATGGCAAAGCTCGAGGCATCGTTACTTCAAAGGATATCTTGATGCGGGTAATTGCCCAAAATCTTCCACCAGCATCAACTCCTGTTGAGAAGATCATGACTCCAAATCCAGAATGTGCAGTAATTGATACACCAATTGTCGACGCGCTTCATACTATGCATGATGGAAAATTTTTACACCTTCCGGTCGTTGATAGAGATGGCATTGTAGTTGCTGTGGTCGATGTGATTCATGTGACTCATGCTGCTGTGGCTACTGTTAGTCAGGTCGGAAACAATGAAGCTGCCAACTCCATGATGCAAAGATTTTGGGATTCAGCCATGGCCTTACCTCCAATTGACGATGATGACGAAACACGAAGTGAGGCTTCCTTCAGAATAGGTTCTGATGGAGGAGAAACAGGGAGATCCATGCCTTTTACTTCTGCAAGCATGCCCAATACATTTTCCTTCAAAGTACAAGATAAGAAGGGCAGAATGCATAGATTCACATGTGATACCCGGAACATGACGGAGGTTATAACTGCAATCATTCAAAGAGTTGGTACTGATATTGACCCTGACAATCTGCCTCAAATTCTGTATGAAGATGAAGATCACGATAAAGTTGTATTGACTTCAGACAGTGATCTTGCCGCAGCTGTGGACCATGCAAGGACTGCTGGTTTGAAGGGATTGAAATTGTATTTAGACTACGAGGGAACACAAGGTCGCAGGAAAGGTTCGCGTTCGGGAAATTTAGACCATGCGTATTCAGATGCATGGGCCTCAGCATACAGTGGTGTTGCTGCCGGAGCTGCTCTTGTTGCTGGATTAGGCCTATTAACATACTTGAAACGAGTTTGA 1587 0.443 MTSRRSISSSRRASESAVGAGAVRKSLSISRHMGLTGERTVKSLRLSKALTVPETTTVYEACRRMAARRVDALLLTDSNGLLCGILTDKDIARKVVAQEINPEDTPASKVMTRNPVFVLSETLAVEALQKMVQGKFRHLPVVENGEVLALLDIAKCLHDATARMERAAEKGKAIAAAVEGVEKHWGSTNSDSNSSFIEALREKIFKPSLSTIIPENSKMVTVSPTDSVLKTTKTMVELHASCAVVTVDGKARGIVTSKDILMRVIAQNLPPASTPVEKIMTPNPECAVIDTPIVDALHTMHDGKFLHLPVVDRDGIVVAVVDVIHVTHAAVATVSQVGNNEAANSMMQRFWDSAMALPPIDDDDETRSEASFRIGSDGGETGRSMPFTSASMPNTFSFKVQDKKGRMHRFTCDTRNMTEVITAIIQRVGTDIDPDNLPQILYEDEDHDKVVLTSDSDLAAAVDHARTAGLKGLKLYLDYEGTQGRRKGSRSGNLDHAYSDAWASAYSGVAAGAALVAGLGLLTYLKRV* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3319 528 Pfam PB1 domain 395 478 IPR000270 GO:0005515
Tpr3g3319 528 ProSiteProfiles PB1 domain profile. 393 480 IPR000270 GO:0005515
Tpr3g3319 528 SUPERFAMILY CBS-domain pair 38 155 IPR046342 -
Tpr3g3319 528 Gene3D - 187 345 IPR046342 -
Tpr3g3319 528 Gene3D - 24 176 IPR046342 -
Tpr3g3319 528 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 16 516 - -
Tpr3g3319 528 CDD PB1_MUG70 396 479 - -
Tpr3g3319 528 Pfam CBS domain 217 262 IPR000644 -
Tpr3g3319 528 Pfam CBS domain 47 95 IPR000644 -
Tpr3g3319 528 Pfam CBS domain 108 150 IPR000644 -
Tpr3g3319 528 Pfam CBS domain 276 326 IPR000644 -
Tpr3g3319 528 CDD CBS_pair_MUG70_1 46 160 - -
Tpr3g3319 528 SMART PB1_new 395 480 IPR000270 GO:0005515
Tpr3g3319 528 SUPERFAMILY CAD & PB1 domains 389 483 - -
Tpr3g3319 528 SUPERFAMILY CBS-domain pair 217 330 IPR046342 -
Tpr3g3319 528 ProSiteProfiles CBS domain profile. 280 341 IPR000644 -
Tpr3g3319 528 PANTHER CBS/OCTICOSAPEPTIDE/PHOX/BEMP1 (PB1) DOMAIN PROTEIN 16 516 - -
Tpr3g3319 528 SMART cbs_1 218 265 IPR000644 -
Tpr3g3319 528 SMART cbs_1 283 331 IPR000644 -
Tpr3g3319 528 SMART cbs_1 114 158 IPR000644 -
Tpr3g3319 528 SMART cbs_1 48 96 IPR000644 -
Tpr3g3319 528 ProSiteProfiles CBS domain profile. 111 169 IPR000644 -
Tpr3g3319 528 ProSiteProfiles CBS domain profile. 45 103 IPR000644 -
Tpr3g3319 528 ProSiteProfiles CBS domain profile. 212 271 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3319 Tpr-Chr3 36621877 36628598 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3319 - - gmx:100785816 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3319 3 36621877 36628598 Tpr3g3319 3 36621877 36628598 ECH
Tpr3g3319 3 36621877 36628598 Tpr3g0681 3 6566485 6572663 PCT