Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02398 ATGTCAAGCCTCGGTGGTTCTTATCGAAGGAGCGCTTCCTTGTCCAATAGCCCCACGCGCTCCAAGAAGAAACCTTCTGATTATTCACCGCTAGACTTAACTACTCGTAAAACGTTTTCCTCATTACGCACCACGGGAGAGAGAACTGTGAAAACATTGCGGCTTTCAAAGGCATTGACAGTTCCTGAAACAACATCTGTCTATGAAGCTTGCCGTAGGATGGCTGCTCGCAAAGTAGATGCTCTATTACTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGGACATAGCAACAAGAGTTATTGCCCGAGAGCTTAATCTCGAAGAAACACCTGCTTCCAAGGTTATGACAAGGAATCCTGTATTTGTCCTTTCTGACACTCTTGCTGTGGAAGCCCTCCAAAAGATGGTGCAAGGGAGGTTCAGACATTTACCTGTGGTGGAGAATGGAGAAGTTGTAGCCATACTTGACATAGCTAAGTGTTTGTATGATGCCATTGCCCGTATGGAAAGAGCAGCTGAGAAAGGAAAGGCAATTGCCGCAGCTGTTGAAGGTATCGAAAAACACTGGGGAACATCTGCTCCTGGCTCCAATTCGTCATTCATTGAGACTCTTCGCGAGCAGATATTTAAGCCATCTTTGTCTACAATTATTCCTGAGAATTCAAAGGTTGTAACAGTTTCCCCAACAGACTCAGTTTTGACGACGACAAAGAAGATGCTAGAACTTCGTGTAAGTTGTGCTGTTGTGGCAGTTGACGACAAACCTTGTGGTATTCTTACTTCAAAAGATATATTGATGCGGGTAATAGCACAAAGTCTTCCTCCATCGTCAACTCTTGTTCAGAAGGTCATGACTCCAAATCCAGAATGTGCAATAATTGACACACCAATTGTCGACGCACTTCACACTATGCATGATGGAAAATTTTTGCATCTTCCAGTGGTTGATAGAGATGGCATTGTTGTTGCTACGGTTGATGTGATTCATATCACTCATGCGGCAGTGGCGACAGCTAGTCAGGTGGGAAATACTGCCAATTTTAACAATGAAGCTGCCAACTCCATGATGCAAAAATTTTGGGATTCGGCCATGGCCTTAACTGCAAATGATGAGGATGACGATTCACAAAGGTTACATATCGACAGTTCCTTGAAAATGATTTCTGAGGGAGGAGAAACAGGGAGATCCATGTCTTATCTTGGGTCAAGCATGCAGAACGCATTTTCCTTCAAATTACAAGACAGGAAGGGTAGATTGCATAGGTTCACATGCGATACTCGGAGCTTGGCAGAGGTTATAACTTCCATCGTTCAGAGAGTCGGTGATGATATTGACCCCAAGAACCTGCCCCAGATTTTGTATGAAGATGAAGAACATGATAAAGTTGTACTGGCTTCAGACAATGATCTTACTGCAGCTGTGGACCACGCGAAGACGGCTGGTTTAAAGGGATTGAGATTGCATTTAGACTACTCTGGAACACGAGATTATGGAACTGATTCAAGTCCAGAAAGTTTGAGCTATGCTAATCCAGAAGCATGGGGCACGACACACAATGCCATTGCTGCTGGAGCTGCAATTATGGCTGCCTTAGGCCTATTGGCGTTTGTGAGGCGAAGCCATTGA 1641 0.4436 MSSLGGSYRRSASLSNSPTRSKKKPSDYSPLDLTTRKTFSSLRTTGERTVKTLRLSKALTVPETTSVYEACRRMAARKVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPASKVMTRNPVFVLSDTLAVEALQKMVQGRFRHLPVVENGEVVAILDIAKCLYDAIARMERAAEKGKAIAAAVEGIEKHWGTSAPGSNSSFIETLREQIFKPSLSTIIPENSKVVTVSPTDSVLTTTKKMLELRVSCAVVAVDDKPCGILTSKDILMRVIAQSLPPSSTLVQKVMTPNPECAIIDTPIVDALHTMHDGKFLHLPVVDRDGIVVATVDVIHITHAAVATASQVGNTANFNNEAANSMMQKFWDSAMALTANDEDDDSQRLHIDSSLKMISEGGETGRSMSYLGSSMQNAFSFKLQDRKGRLHRFTCDTRSLAEVITSIVQRVGDDIDPKNLPQILYEDEEHDKVVLASDNDLTAAVDHAKTAGLKGLRLHLDYSGTRDYGTDSSPESLSYANPEAWGTTHNAIAAGAAIMAALGLLAFVRRSH 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02398 546 CDD CBS_pair_MUG70_1 55 171 - -
Cca09g02398 546 SUPERFAMILY CBS-domain pair 226 339 IPR046342 -
Cca09g02398 546 SMART cbs_1 292 340 IPR000644 -
Cca09g02398 546 SMART cbs_1 57 105 IPR000644 -
Cca09g02398 546 SMART cbs_1 227 274 IPR000644 -
Cca09g02398 546 SMART cbs_1 123 167 IPR000644 -
Cca09g02398 546 Gene3D - 215 358 IPR046342 -
Cca09g02398 546 ProSiteProfiles CBS domain profile. 54 113 IPR000644 -
Cca09g02398 546 Gene3D - 34 185 IPR046342 -
Cca09g02398 546 ProSiteProfiles CBS domain profile. 120 178 IPR000644 -
Cca09g02398 546 SUPERFAMILY CBS-domain pair 47 163 IPR046342 -
Cca09g02398 546 Pfam CBS domain 225 271 IPR000644 -
Cca09g02398 546 Pfam CBS domain 285 336 IPR000644 -
Cca09g02398 546 Pfam CBS domain 57 102 IPR000644 -
Cca09g02398 546 Pfam CBS domain 117 160 IPR000644 -
Cca09g02398 546 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 31 534 IPR034896 -
Cca09g02398 546 MobiDBLite consensus disorder prediction 1 24 - -
Cca09g02398 546 CDD CBS_pair_MUG70_2 225 341 - -
Cca09g02398 546 SMART PB1_new 412 497 IPR000270 GO:0005515
Cca09g02398 546 ProSiteProfiles PB1 domain profile. 410 497 IPR000270 GO:0005515
Cca09g02398 546 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 31 534 - -
Cca09g02398 546 ProSiteProfiles CBS domain profile. 289 346 IPR000644 -
Cca09g02398 546 CDD PB1_MUG70 413 497 - -
Cca09g02398 546 MobiDBLite consensus disorder prediction 1 32 - -
Cca09g02398 546 ProSiteProfiles CBS domain profile. 221 281 IPR000644 -
Cca09g02398 546 Pfam PB1 domain 413 495 IPR000270 GO:0005515
Cca09g02398 546 SUPERFAMILY CAD & PB1 domains 404 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02398 Cca-Chr9 49367183 49373678 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02398 - - gmx:100783514 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02398 09 49367183 49373678 Cca09g02398 09 49367183 49373678 ECH
Cca03g00316 03 4978633 4994115 Cca09g02398 09 49367183 49373678 PCT