Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04674 ATGACTAGTCGAAGGAGTATTTCATCTTCTAGGAGAGCTTCTGAGTCTGCAGTTGGACCAGGAATAGTTCGAAAATCTCTTTCGATTTCGCGCCATATGGGATTAACAGGAGAGCGGACAGTGAAATCGTTGCGTCTTTCAAAGGCCTTGACAGTACCCGAAACAACAACTGTATATGAAGCTTGTCGACGGATGGCTGCCCGTAGAGTGGATGCGCTGTTACTAACTGATTCTAATGGTTTGCTTTGTGGAATCCTCACAGACAAGGATATAGCAAGAAAAGTTGTTGCCCAAGAGATTAATCCGGAAGACACACCTGTTTCCAAGGTTATGACAAGAAATCCGGTATTTGTCCTTTCTGAAACTCTTGCTGTGGAAGCCCTTCAAAAGATGGTGCAAGGTAAATTTAGGCATCTACCTGTGGTGGAGAATGGGGAAGTTTTGGCTTTACTCGACATAGCAAAGTGTTTGCATGATGCCACTGCACGTATGGAAAGGGCTGCAGAGAAAGGAAAAGCAATTGCAGCAGCTGTTGAAGGGGTTGAAAAACATTGGGGTTCATCTAATTTGGACTCTAATTCATCATTTATTGAGGCCCTTCGGGAAAAGATATTCAAACCATCACTGTCCACAATCATTCCCGAGAATTCAAAGATGGTGACAGTTTCGCCAACAGATTCGGTTCTGAAAGCAACAAAAATGATGGTTGAACTTCATGCAAGTTGTGCTGTTGTGACTGTTGATGGCAAAGCTCGAGGAATCGTTACTTCAAAGGATATCTTGATGCGGGTAATTGCACAAAATCTTCCACCAGCATCAACTCCTGTTGAGAAGATCATGACTCCAAATCCAGAATGTGCAGTAATTGATACACCAATTGTCGATGCGCTTCATAGTATGCATGATGGAAAGTTTTTGCACCTTCCGGTGGTTGATAGAGATGGCATTGTAGTTGCTGTGGTTGATGTGATTCATGTGACTCATGCTGCTGTGGCTACTGTTAGTCAGGTTGGAAACAATGATGCTGCCAACTCCATGATGCAAAGATTTTGGGATTCAGCCATGGCCTTACCTCCAATTGACGATGATGACGAAACACGAAGTGAGAGCTCCTTCAAAATAGGTTCTGATGGAGGAGAAACAGGGAGATCCATGCCTTTTACTTCTGCAAGCATGCCCAATACATTTTCCTTCAAAGTACAAGATAAGAAGGGCAGAATGCATAGATTCACATGTGGTAAGCAAACTATGTTATTTGTTGGATCTGTCTGTTTTTCATCTATTTGTGTGTACACCAGCAGCTATAAATAA 1311 0.4279 MTSRRSISSSRRASESAVGPGIVRKSLSISRHMGLTGERTVKSLRLSKALTVPETTTVYEACRRMAARRVDALLLTDSNGLLCGILTDKDIARKVVAQEINPEDTPVSKVMTRNPVFVLSETLAVEALQKMVQGKFRHLPVVENGEVLALLDIAKCLHDATARMERAAEKGKAIAAAVEGVEKHWGSSNLDSNSSFIEALREKIFKPSLSTIIPENSKMVTVSPTDSVLKATKMMVELHASCAVVTVDGKARGIVTSKDILMRVIAQNLPPASTPVEKIMTPNPECAVIDTPIVDALHSMHDGKFLHLPVVDRDGIVVAVVDVIHVTHAAVATVSQVGNNDAANSMMQRFWDSAMALPPIDDDDETRSESSFKIGSDGGETGRSMPFTSASMPNTFSFKVQDKKGRMHRFTCGKQTMLFVGSVCFSSICVYTSSYK 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04674 436 SUPERFAMILY CBS-domain pair 38 155 IPR046342 -
Trre5g04674 436 SUPERFAMILY CBS-domain pair 217 330 IPR046342 -
Trre5g04674 436 Pfam CBS domain 47 95 IPR000644 -
Trre5g04674 436 Pfam CBS domain 276 326 IPR000644 -
Trre5g04674 436 Pfam CBS domain 107 150 IPR000644 -
Trre5g04674 436 Pfam CBS domain 217 262 IPR000644 -
Trre5g04674 436 ProSiteProfiles CBS domain profile. 280 337 IPR000644 -
Trre5g04674 436 SMART cbs_1 114 158 IPR000644 -
Trre5g04674 436 SMART cbs_1 218 265 IPR000644 -
Trre5g04674 436 SMART cbs_1 283 331 IPR000644 -
Trre5g04674 436 SMART cbs_1 48 96 IPR000644 -
Trre5g04674 436 ProSiteProfiles CBS domain profile. 212 271 IPR000644 -
Trre5g04674 436 MobiDBLite consensus disorder prediction 358 388 - -
Trre5g04674 436 MobiDBLite consensus disorder prediction 372 388 - -
Trre5g04674 436 CDD CBS_pair_MUG70_1 46 160 - -
Trre5g04674 436 Gene3D - 191 345 IPR046342 -
Trre5g04674 436 Gene3D - 25 176 IPR046342 -
Trre5g04674 436 ProSiteProfiles CBS domain profile. 111 169 IPR000644 -
Trre5g04674 436 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 416 - -
Trre5g04674 436 ProSiteProfiles CBS domain profile. 45 103 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04674 Trre-Chr5 48711070 48716140 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04674 - - gmx:100785816 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04674 5 48711070 48716140 Trre5g04674 5 48711070 48716140 ECH
Trre5g04674 5 48711070 48716140 Trre7g05388 7 59947817 59952766 PCT