Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3012 ATGTCGAGTCATGGTGGTTCTTCTCGAAGGAGCGGTTCGTTGACGAATAGCCCTACGCTGGCGAAGAAGAAAGCTTCTGAGTTTTCAGCGTTAGACTTAACTACTCGTAAAACGTTTCAGTCACCTCGCACCACCACGGGAGAGCGAACAGTGAAATCATTGCGCCTTTCAAAGGCATTGACAGTTCCTGAAACAACAACCGTCTATGAAGCTTGCCGGAGGATGGCTGCTCGCAAAGTAGATGCTCTATTACTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTAACAGACAAGGATATAGCAACAAGGGTTATTGCTCGTGAGGTTAATCTCGAAGAAACACCTGTTTCCAAGGTTATGACAAGGAATCCAGTTTTTGTCCTTTCTGACACTCTTGCTGTGGAAGCTCTCCAAAAGATGGTGCAAGGTTGGTTCAGACATTTACCTGTCGTGGAGAATGGAGAAGTTGTTGCCATACTTGACATAGCAAAGTGTTTGTACGATGCCATTGCCCGTATGGAAAGAGCAGCTGAGAAAGGAAAGGCAATTGCGGCAGCCGTTGAAGGTATCGAAAAACACTGGGGAGCATCTACTTCTGGCTCCAATTCGTCATTCCTTGACACTCTTCGCGAGCAGATATTTAAGCCATCTTTGTCTACAATTATTCCTGAGAATTCAAAGGTTGTAACAGTTTCACCAACAGACACAGTTTTGACAACAACAAAGAAGATGCTTGAACTTCGAGCAAGTTCTGCTGTTGTGACGGTTGATGACAAAACTTGTGGTATTCTTACCTCAAAGGATATCTTGATGCGGGTAATAGCACAGAGTCTTCCTCCATCGTCAACTCTTGTTGAGAAGGTCATGACTCCAAATCCACAATGTGCAATAATTGATACACCAATTGTCGATGCACTTCACACTATGCATGATGGAAAATTTTTGCATCTTCCTGTGGTTGATAGAGACGGCATTGTTGTTGCTACGGTTGATGTGATTCATATCACTCATGCGGCAGTAGCGACAGCTAGTCAGGTCGGAAATACTGCCACTTTTAACAATGAAGCTGCCAACTCCATGATACAAAAATTTTGGGATTCGGCCATGGCCTTAACTCCAAATGAGGATGATGACGATTCAcaaagTGACAGTTCCTTGAAGATGATTTCTGAGGGAGGAGAAACAGGGAGATCCATTTCTTATCTTGCGTCAAGCACGCAGAACGCATTTTCCTTCAAATTACAAGACAAGAGGGGCAGATTGCATAGGTTCACATGCGATACGCGGAGCTTGACAGAGGTTATAACTTCCATCGTTCAGAGAGTTGGTGATGATATTGACCCCAAGAATCTGCCCCAAATTTTGTATGAAGATGAAGAACATGATAAAGTTGTACTGGCTTCAGACAGTGATCTTGCTGCAGCTGTGGACCACGCGAAGACGGCTGGTTTGAAGGGATTGAGATTGCATTTAGACTACTCTGGAATACATGGTTATGGAACTGATTCAAGTTCAGGAAGTTTGAAATATGCTTATTCAGAAGTATGGGCCTCGGCATACAGCGCCATTGCTGCTGGAGCTGCAATTGTTGCTGCCTTAGGCCTATTGGCGTTTGTGAGGCGAAGTCTATAA 1635 0.441 MSSHGGSSRRSGSLTNSPTLAKKKASEFSALDLTTRKTFQSPRTTTGERTVKSLRLSKALTVPETTTVYEACRRMAARKVDALLLTDSNALLCGILTDKDIATRVIAREVNLEETPVSKVMTRNPVFVLSDTLAVEALQKMVQGWFRHLPVVENGEVVAILDIAKCLYDAIARMERAAEKGKAIAAAVEGIEKHWGASTSGSNSSFLDTLREQIFKPSLSTIIPENSKVVTVSPTDTVLTTTKKMLELRASSAVVTVDDKTCGILTSKDILMRVIAQSLPPSSTLVEKVMTPNPQCAIIDTPIVDALHTMHDGKFLHLPVVDRDGIVVATVDVIHITHAAVATASQVGNTATFNNEAANSMIQKFWDSAMALTPNEDDDDSQSDSSLKMISEGGETGRSISYLASSTQNAFSFKLQDKRGRLHRFTCDTRSLTEVITSIVQRVGDDIDPKNLPQILYEDEEHDKVVLASDSDLAAAVDHAKTAGLKGLRLHLDYSGIHGYGTDSSSGSLKYAYSEVWASAYSAIAAGAAIVAALGLLAFVRRSL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3012 544 ProSiteProfiles CBS domain profile. 121 179 IPR000644 -
Ssu5g3012 544 SUPERFAMILY CBS-domain pair 48 164 IPR046342 -
Ssu5g3012 544 SMART cbs_1 293 341 IPR000644 -
Ssu5g3012 544 SMART cbs_1 58 106 IPR000644 -
Ssu5g3012 544 SMART cbs_1 228 275 IPR000644 -
Ssu5g3012 544 SMART cbs_1 124 168 IPR000644 -
Ssu5g3012 544 CDD PB1_MUG70 411 495 - -
Ssu5g3012 544 SMART PB1_new 410 495 IPR000270 GO:0005515
Ssu5g3012 544 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 21 531 IPR034896 -
Ssu5g3012 544 SUPERFAMILY CAD & PB1 domains 404 498 - -
Ssu5g3012 544 ProSiteProfiles PB1 domain profile. 408 495 IPR000270 GO:0005515
Ssu5g3012 544 ProSiteProfiles CBS domain profile. 290 347 IPR000644 -
Ssu5g3012 544 ProSiteProfiles CBS domain profile. 222 282 IPR000644 -
Ssu5g3012 544 CDD CBS_pair_MUG70_1 56 172 - -
Ssu5g3012 544 Pfam CBS domain 117 161 IPR000644 -
Ssu5g3012 544 Pfam CBS domain 286 337 IPR000644 -
Ssu5g3012 544 Pfam CBS domain 226 272 IPR000644 -
Ssu5g3012 544 Pfam CBS domain 57 103 IPR000644 -
Ssu5g3012 544 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 21 531 - -
Ssu5g3012 544 CDD CBS_pair_MUG70_2 226 342 - -
Ssu5g3012 544 MobiDBLite consensus disorder prediction 1 22 - -
Ssu5g3012 544 SUPERFAMILY CBS-domain pair 227 340 IPR046342 -
Ssu5g3012 544 Pfam PB1 domain 411 493 IPR000270 GO:0005515
Ssu5g3012 544 Gene3D - 29 186 IPR046342 -
Ssu5g3012 544 Gene3D - 199 351 IPR046342 -
Ssu5g3012 544 ProSiteProfiles CBS domain profile. 55 114 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3012 Ssu-Chr5 77344083 77349674 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3012 - - gmx:100783514 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3012 5 77344083 77349674 Ssu5g3012 5 77344083 77349674 ECH
Ssu1g2391 1 66471678 66478001 Ssu5g3012 5 77344083 77349674 PCT