Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0839 ATGTCAAGTCAACGCGGTTCTTCTAGAAGAAGTTTTTCGTCTGCGAAGAGAACTTCTGAGTCTGGAGTGTCTCACTCTACTAGTCGAAGATCTTTATCTTATTCACGCTTCCCTATGGGACTAACGGGAGAACGGACAGTGAAATCGTTGCGACTTTCGAAGGCATTGACAGTACCTGACACAACGACTGTCTATGAAGCTTGTCGTCGAATGGCTGCCCGTAGAGTAGATGCTCTATTACTAACTGATGCTAATGCCATGCTCTGTGGAATCCTCACAGACAAGGACATAGTAACAAGAGTTATTGCTCAAGATATTAAGCTTGAAGACACACTTGTTTCCAAGATTATGACTAGGAATCCGGTATTTGTCCTTTCTGAAAGTCTTGCTGTGGAAGCTCTGCAAAAGATGGTGCAAGGGAAATTCAGACATTTACCTGTAGTGGAGAATGGAGAAGTTGTTGGCTTACTTGACATAGCAAAGTGTTTGTATGATGCCATCGCCCGTATGGAAAGGGCAGCTGAGAAAGGAAAAGCAATTGCAGCAGCTGTTGAAGGAGTTGAAAAACAATGGGGATCATCTGTTTTAGCCCCCAGTTCATCATTCATTGAGACTCTTCGGGAGCAGATATTCAAGCCAGCTTTGTCTACAATCATTCCTGATAATTCAAAGGTAGCTACAGTTTCACCAGAAGACTCAGTTTTGATAACAACGAAGAAGATGCTTGAACTTCATGTAAGTGCAGCTATTGTGACAGTTGATGGCAAACCTTGTGGCATCCTTACTTCAAAGGATATCTTGATGCGGGTAATCGCACAAAATCTTTCCCTGGAATCAACTCCAGTAGAGAAGGTCATGACTCCAAATCCTGAATGTGCAGTAATTGATACACCTATTGTTGATGCACTTCACACCATGCATGATGGAAAATTTTTGCATCTTCCTGTGGTTGATAGAGATGGCAGTGTAGTTGCTGTGGTGGATGTGATTCATGTCACTCATGCTGCTGTAGATACTGTAAGTCAGGTTGGCAACAATGAAGTTGCCACCTCCATGATGCAAAGATTTTGGGATTCAGCTATGGCCTCTACTCCAAATGATGATGATGATGAAACACGAAGTGACAATTCCTTTAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCCTTCTTTGTCTTTCTTCAAGCATGACAAACACATTTTCCTTCAAAGTACAAGATAAGAAAGGCAGAATGCATAGATTCACATGTGATACTCGGAGCATGACAGAGGTTATAACTTCAGTCCTTCAGAGACTTGGTAATGATATTGACCCCAGCAACCTGCCCCTAATTATGTATGAAGACGAAGATCACGATAAGGTTGTATTGTCTTCAGATAGTGATCTTGCTGTTGCTGTGCACCACGCAAGGACTTCTGGTTTGAAGGGATTGAGATTGCATTTGGACTACGTAGGGACACATGGTTATGGGACAGGTTCTAGTTCCAAAGGCTTAAAGTATGCTAATTCAGAGTCATGGGCCTCAGCATATAGTGCTGTTGCTGCTGGAGCTGCATTTGTTGCTGGCTTAGGTCTACTAACGTACTTGAAGAGGCCGAGCTGA 1608 0.431 MSSQRGSSRRSFSSAKRTSESGVSHSTSRRSLSYSRFPMGLTGERTVKSLRLSKALTVPDTTTVYEACRRMAARRVDALLLTDANAMLCGILTDKDIVTRVIAQDIKLEDTLVSKIMTRNPVFVLSESLAVEALQKMVQGKFRHLPVVENGEVVGLLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKQWGSSVLAPSSSFIETLREQIFKPALSTIIPDNSKVATVSPEDSVLITTKKMLELHVSAAIVTVDGKPCGILTSKDILMRVIAQNLSLESTPVEKVMTPNPECAVIDTPIVDALHTMHDGKFLHLPVVDRDGSVVAVVDVIHVTHAAVDTVSQVGNNEVATSMMQRFWDSAMASTPNDDDDETRSDNSFKVASEGGETGRSLLCLSSSMTNTFSFKVQDKKGRMHRFTCDTRSMTEVITSVLQRLGNDIDPSNLPLIMYEDEDHDKVVLSSDSDLAVAVHHARTSGLKGLRLHLDYVGTHGYGTGSSSKGLKYANSESWASAYSAVAAGAAFVAGLGLLTYLKRPS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0839 535 ProSiteProfiles CBS domain profile. 51 108 IPR000644 -
Lal17g0839 535 SUPERFAMILY CBS-domain pair 223 338 IPR046342 -
Lal17g0839 535 Gene3D - 22 182 IPR046342 -
Lal17g0839 535 ProSiteProfiles PB1 domain profile. 399 486 IPR000270 GO:0005515
Lal17g0839 535 ProSiteProfiles CBS domain profile. 218 277 IPR000644 -
Lal17g0839 535 SUPERFAMILY CAD & PB1 domains 394 487 - -
Lal17g0839 535 ProSiteProfiles CBS domain profile. 117 175 IPR000644 -
Lal17g0839 535 SMART cbs_1 54 102 IPR000644 -
Lal17g0839 535 SMART cbs_1 224 271 IPR000644 -
Lal17g0839 535 SMART cbs_1 289 337 IPR000644 -
Lal17g0839 535 SMART cbs_1 120 164 IPR000644 -
Lal17g0839 535 SMART PB1_new 401 486 IPR000270 GO:0005515
Lal17g0839 535 ProSiteProfiles CBS domain profile. 286 343 IPR000644 -
Lal17g0839 535 MobiDBLite consensus disorder prediction 361 383 - -
Lal17g0839 535 Gene3D - 397 483 - -
Lal17g0839 535 PANTHER CBS/OCTICOSAPEPTIDE/PHOX/BEMP1 (PB1) DOMAIN PROTEIN 21 522 - -
Lal17g0839 535 CDD CBS_pair_MUG70_1 52 168 - -
Lal17g0839 535 MobiDBLite consensus disorder prediction 1 27 - -
Lal17g0839 535 Pfam PB1 domain 401 484 IPR000270 GO:0005515
Lal17g0839 535 Gene3D - 214 340 IPR046342 -
Lal17g0839 535 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 21 522 - -
Lal17g0839 535 Pfam CBS domain 222 268 IPR000644 -
Lal17g0839 535 Pfam CBS domain 282 333 IPR000644 -
Lal17g0839 535 Pfam CBS domain 113 158 IPR000644 -
Lal17g0839 535 Pfam CBS domain 53 99 IPR000644 -
Lal17g0839 535 SUPERFAMILY CBS-domain pair 44 161 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0839 Lal-Chr17 6285043 6291298 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0839 - - gmx:100785816 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0839 17 6285043 6291298 Lal17g0839 17 6285043 6291298 ECH
Lal17g0839 17 6285043 6291298 Lal14g1454 14 15658392 15663615 PCT
Lal17g0839 17 6285043 6291298 Lal19g1024 19 14093150 14099249 PCT