Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3502 ATGGCGAGTCGAAGGAGTGTTTCGTCTCCTAGAAGAGCCTCTGAGTCTGCTGTCGGAAGAGGAGGACCTCGTAAATCAATTTCCTTAGCACGCCCTATGGGATTAACAGGAGAGCGGACAGTGAAGTCATTGCGACTTTCGAAAGCCCTGACAGTACCTGAAACAACAACTGTATATGAAGCCTGTCGTCGGATGGCTGCCCGTAGGGTGGATGCTCTATTACTCACCGATTCTAATGGGTTGCTTTGTGGAATCCTCACAGACAAGGATATAGCAACAAAAGTTGTTGCCGAAGAGATTAATCCTGAAGACACGCCTGTTTCCAAGGTTATGACAAGAAATCCGGTATTTGTCCTTTCTGAAACTCTTGCTGTGGAAGCCCTCCAAAAGATGGTGCAAGGGAAATTTAGGCATCTACCTGTGGTGGAGAATGGAGAAGTTTTGGCTTTACTCGACATAGCAAAGTGTTTGCACGATGCCACTGCACGTATGGAAAGGGCCGCAGAGAAAGGAAAAGCAATTGCAGCAGCTGTTGAAGGAGTTGAAAAACACTGGGGATCTTCTAATTCTGATTCTAATTCATCATTTGTTGAGGCCCTTCGGGAAAAGATATTCAAACCATCACTGTCCACGATCATTCACGAGAATTCAAAGATGGTAACAGTTGCACCAACAGACTCGATTTTGAAAACAACAAAGAAGATGGTTGAACTTCATGCAGGTTGTGCTGTTGTCACTGTTGATGGCAAACCTCGAGGCATCGTTACTTCAAGGGATATCTTGATGCGGGTAATTGCACAAAATCTTCCACCAGCATCAACTCATGTTGAGAAGGTCATGACTCCAAATCCAGAATGTGTAATAATTGATACACCAATTGTCGATGCACTTCATACTATGCATGATGGAAAATTTTTACATCTTCCGGTGGTTGATAGAGATGGCATTGTAGTTGCTGTGGTCGACGTGATACATGTGACTCATGCTGCTGTGGCTACTGTTAGTCAGGTCGGAAACAACGAAGCTTCCACCACCTTGATGCAAAGGTTTTGGGATTCAGCCATGGCCTTGCCTCCAAATGATGATGACGATGAAACAAGAAGTGAGAGTTCCTTCAAAATAGGTTCTGATGGAGGAGAAACAGGGAGATCCATTCCTTATATTTCTGCTAGCATGCCCAATACATTTTCCTTCAAAGTACAAGATAAAAAGGGCAGAATGCATAGATTCACATGTGATACCCGGAGCATGACGGAGGTTATAAGTTCAATCCTTCAAAGACTTGGTACTGATATTGACCCTAACAATCTGCCTCATATTCTGTATGAAGATGAAGATCATGATAAAGTTGTATTAGCTTCAGACAGTGATCTTGCCGCAGCTGTAGACCATGCAAGGACCGTTGGTTTGAAGGGATTGAAATTGTATTTAGACTATGAGGGAACACGTGGTCACAGGAAAGGTTCACGTTCGGGAAGTTTAGAGAATGCGTATTCAGATGCATGGGCCTCAGCATATAGTGGTGTTGCTGCCGGAGCTGCTCTTGTCGCTGGCTTAGGCCTTTTAACATATTTGAAGCGAGTTTGA 1587 0.4411 MASRRSVSSPRRASESAVGRGGPRKSISLARPMGLTGERTVKSLRLSKALTVPETTTVYEACRRMAARRVDALLLTDSNGLLCGILTDKDIATKVVAEEINPEDTPVSKVMTRNPVFVLSETLAVEALQKMVQGKFRHLPVVENGEVLALLDIAKCLHDATARMERAAEKGKAIAAAVEGVEKHWGSSNSDSNSSFVEALREKIFKPSLSTIIHENSKMVTVAPTDSILKTTKKMVELHAGCAVVTVDGKPRGIVTSRDILMRVIAQNLPPASTHVEKVMTPNPECVIIDTPIVDALHTMHDGKFLHLPVVDRDGIVVAVVDVIHVTHAAVATVSQVGNNEASTTLMQRFWDSAMALPPNDDDDETRSESSFKIGSDGGETGRSIPYISASMPNTFSFKVQDKKGRMHRFTCDTRSMTEVISSILQRLGTDIDPNNLPHILYEDEDHDKVVLASDSDLAAAVDHARTVGLKGLKLYLDYEGTRGHRKGSRSGSLENAYSDAWASAYSGVAAGAALVAGLGLLTYLKRV* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3502 528 SUPERFAMILY CBS-domain pair 38 155 IPR046342 -
Mtr3g3502 528 Pfam CBS domain 47 95 IPR000644 -
Mtr3g3502 528 Pfam CBS domain 107 150 IPR000644 -
Mtr3g3502 528 Pfam CBS domain 276 326 IPR000644 -
Mtr3g3502 528 Pfam CBS domain 216 262 IPR000644 -
Mtr3g3502 528 SMART PB1_new 395 480 IPR000270 GO:0005515
Mtr3g3502 528 ProSiteProfiles CBS domain profile. 215 271 IPR000644 -
Mtr3g3502 528 SUPERFAMILY CBS-domain pair 217 330 IPR046342 -
Mtr3g3502 528 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 16 516 - -
Mtr3g3502 528 Pfam PB1 domain 395 478 IPR000270 GO:0005515
Mtr3g3502 528 Gene3D - 186 342 IPR046342 -
Mtr3g3502 528 Gene3D - 32 176 IPR046342 -
Mtr3g3502 528 PANTHER CBS/OCTICOSAPEPTIDE/PHOX/BEMP1 (PB1) DOMAIN PROTEIN 16 516 - -
Mtr3g3502 528 CDD PB1_MUG70 396 479 - -
Mtr3g3502 528 CDD CBS_pair_MUG70_1 46 160 - -
Mtr3g3502 528 ProSiteProfiles PB1 domain profile. 393 480 IPR000270 GO:0005515
Mtr3g3502 528 ProSiteProfiles CBS domain profile. 45 103 IPR000644 -
Mtr3g3502 528 ProSiteProfiles CBS domain profile. 280 341 IPR000644 -
Mtr3g3502 528 MobiDBLite consensus disorder prediction 355 386 - -
Mtr3g3502 528 ProSiteProfiles CBS domain profile. 111 169 IPR000644 -
Mtr3g3502 528 SUPERFAMILY CAD & PB1 domains 389 482 - -
Mtr3g3502 528 MobiDBLite consensus disorder prediction 1 29 - -
Mtr3g3502 528 SMART cbs_1 48 96 IPR000644 -
Mtr3g3502 528 SMART cbs_1 283 331 IPR000644 -
Mtr3g3502 528 SMART cbs_1 114 158 IPR000644 -
Mtr3g3502 528 SMART cbs_1 218 265 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3502 Mtr-Chr3 48879626 48887633 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3502 - - gmx:100785816 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3502 3 48879626 48887633 Mtr3g3502 3 48879626 48887633 ECH
Mtr3g3502 3 48879626 48887633 Mtr8g3420 8 44783251 44789245 PCT