Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0097 ATGGGGAAGGGTTTCAGTACCAGAGGGCCTCCCTTTTCCTTCATTTTCTTTCTGTTTCTCACACTTTCAAGTGTTTTCCAAGATGCCCATTTGGGTGCGGTTGCAGCACAGGACCAACGCATCAAGACCATTGTGGTCTTGGTTATGGAGAACAGGTCCTTCGATCACATGCTTGGATGGATGAAGAGATCCAACTCAGCAATCAATGGAGTCACAGGCAAAGAATGCAACCCAGTTTCTACCAAGAATCCATCCGAAGAAACAATCTGCTTCAAAGATGATGCAGAATATGTGGATCCAGATCCAGGTCACTCCTTTGTAGCAGTGAAACAGCAGGTGTTTGGCTCTGGCACCACTCCTTCAATGATTGGCTTTGTCGAACAAGCCCTCACCATGTCCAAAGAACTCTCTGAGACAGTCATGAAAGGCTTCAAGCCAGAATCAGTCCCAGTTTACGCCAAGCTGGTGGAGGAGTTTGCAGTTTTTGACAGATGGTTCTCTGCACTTCCTGGCCCAACACAACCCAACAGACTCTTTGTCTACTCTGGAACTTCCCATGGTGCTGTAAGCCATGTGAAGGAGAACTTGATAAAAGGTTTCCCACAAAAAACCATATTTGATTCACTCCATGCGAATGGTAAGGACTTTGGCATATACTTTCAAGAAGCCCCCACAATATTTTTTTATAGGAATATGAGGCAGCTCAAGTATTCCTCCAAGTTCCGCCTCTATGATTTGCACTTCAAGAAGGATGCTGAAAAGGGCAAGCTGCCCAGCCTAACAGTGATTGAGCCCAGGTACTTTGATATCAAGATATTGCCTGCAAACGATGATCACCCCTCTCATGATGTTGCCAATGGGCAGAAACTTGTGAAGCAGGTGTACGAGACCTTGAGGGCCAGTCCTCAGTGGAATGAGACCCTTTTTATCATTACTTATGATGAGCATGGTGGATTCTATGATCATGTTGAAACCCCTGTAGACAATGTCCCTAGTCCTGATGGCAACACTGGCCCTGCTCCTGATTTCTTCAAGTTCGATCGCCTCGGGGTTCGGGTTCCTACAATCATGGTCTCTCCTTGGATCAAGAAAGGAACTATTGTGACTCGCCCAAATGGGCCTGCTGAGAACTCTGAATTCGAGCACTCTTCCATCCCTGCCACCATCAAGAAAATGTACAACCTGCCATCGAACTTCTTGACTCACAGAGATGCTTGGGCCGGCACATTTGAGTCTGTCGTTGGGGAGTTAACTTCTCCCCGAACTGACTGCCCAGAGACCCTCCCAGAAGTGACTCCTCTGAGGAAAACAGAAGCAGATGAAGACCGGCAACTGTCTGAGTTTCAAAATGAAATAGTCCAATTAGCAGCCGTTCTTAAGGGCGATCACCACTTGACCAGCTTCCCAGATGAGCTGTTCAAGAACATGACGGTGAAGGAAGGCCGTGATTATGTGATAGGAGCCGTTGCAAGGTTCAAAACAGCGAGCAGACAAGCCTTCATAATGGGGGCGGACGAGTCTGCCATTGTAGACATGAGGTCCTCCCTCACAACTCAACCTTCAGTCCACTATTAG 1575 0.4743 MGKGFSTRGPPFSFIFFLFLTLSSVFQDAHLGAVAAQDQRIKTIVVLVMENRSFDHMLGWMKRSNSAINGVTGKECNPVSTKNPSEETICFKDDAEYVDPDPGHSFVAVKQQVFGSGTTPSMIGFVEQALTMSKELSETVMKGFKPESVPVYAKLVEEFAVFDRWFSALPGPTQPNRLFVYSGTSHGAVSHVKENLIKGFPQKTIFDSLHANGKDFGIYFQEAPTIFFYRNMRQLKYSSKFRLYDLHFKKDAEKGKLPSLTVIEPRYFDIKILPANDDHPSHDVANGQKLVKQVYETLRASPQWNETLFIITYDEHGGFYDHVETPVDNVPSPDGNTGPAPDFFKFDRLGVRVPTIMVSPWIKKGTIVTRPNGPAENSEFEHSSIPATIKKMYNLPSNFLTHRDAWAGTFESVVGELTSPRTDCPETLPEVTPLRKTEADEDRQLSEFQNEIVQLAAVLKGDHHLTSFPDELFKNMTVKEGRDYVIGAVARFKTASRQAFIMGADESAIVDMRSSLTTQPSVHY* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0097 524 PANTHER NON-SPECIFIC PHOSPHOLIPASE C4-RELATED 34 493 IPR007312 GO:0016788
Vvi17g0097 524 Pfam Phosphoesterase family 41 396 IPR007312 GO:0016788
Vvi17g0097 524 SUPERFAMILY Alkaline phosphatase-like 153 371 IPR017850 -
Vvi17g0097 524 Gene3D Alkaline Phosphatase, subunit A 266 444 IPR017850 -
Vvi17g0097 524 Gene3D Alkaline Phosphatase, subunit A 33 201 IPR017850 -
Vvi17g0097 524 FunFam Non-specific phospholipase C1 256 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0097 Vvi-Chr17 845805 847577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0097 12 520 Acyl Lipid Metabolism Gene Families AT3G48610 72.125 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0097 K01114 - vvi:100267995 1050.04