Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2249 ATGTCGAGTCACGGTGGTTCTTCTCAAAGGAGCTGTTCCTTTTCGAATAGCCCCACGCGGGGCAGGAAGAAACTCCCTTCCTCTCACCACTCAACGCCTGACTTTACATCTCGTAAATCCTTTCCCTCACCGCGCACCATGGGAGAGAGAACTGTGAAATCATTGCGGCTTTCAAAGGCATTGACAGTTCCTGAATCAACAACCGTCTCCGAAGCTTGCCGTAGGATGGCTGCTCGCAAAGTAGATGCTCTATTACTGACCGATTCCAATGCTTTGCTCTGTGGAATCCTCACAGACAAGGATATAGCAACCAGAGTTATTGCTCGTGAGATTAATCTCCAAGAAACACCTGTTTCCAAGGTTATGACAAGGAATCCAGTATTTGTCCTTTCTGACACTCTTGCTGTGGAAGCCCTCCAAAAGATGGTGCAAGGGAGGTTCAGGCATTTACCTGTAGTGGAGAATGGAGAAGTTGTTGCCATACTTGACATAGCAAAGTGTTTGTATGATGCCATTGCCCGTATGGAAAGGGCAGCTGAGAAAGGAAAGGCAATTGCGGCAGCAGTTGAAGGTATCGAAAAACACTGGGGAACATCTACTCCTGGCTCCCATTCGACATTCATGGAGACACTTCGCGAGCAAATATTTAAGCCGTCTTTGTCTACAATTATTCCTGAGAATTCAAAGGTTGTTACCGTTTCACCAACAGACTCAGTTTTGACGACAACAAAGAAGATGCTTGAACTTTGTGCAAGTGCAGCTGTTGTGACGGTTGATGACAAAACTTGTGGTATTCTTACTTCAAAGGATATCTTGATGCGGGTAATAGCACAGAGTCTTCCTCCATCGTCAACTCTTGTTGAGAAGGTCATGACTCCAAATCCAGAATATGGAACAGTTGATACACCGATAGTCGATGCACTTCACATTATGCATGATGGAAAATTTTTGCATCTTCCTGTGGTTAATAGAGATGGCATTGTTGTTGCTACGGTTGATGTGATTCATATCACTCATGCGGCTGTGGCAACAGCTAGTCAGGTTGGAAATACTGCCAATTTGAACAACGAAGTTGCCAACTCCATGATACAAAAATTTTGGGATTCGGCCATGGCCTTAGCTCCAAATGAGGAGGATGAGGATTCACAAAGCGAGGCTTCCTTGAAAATGATCTCTGAGGGAGGAGAAACAGCGAGATCCATGTCTTATCTTGCGTCAAGCATGCATAACGCATTTTCCTTCAAATTGCAAGACAGGAAGGGCAGATTGCATAGGTTTACATGCGATACTCGGAGCTTGGCAGAGGTTATAACTTCCATCATTCAGAGAGTCGGTGAGGATATTGACCCCGTTAACCTGCCCCAAATTTTGGGATTGAGATTGCATTTAGACTACTCTGGAACACATGGTTATGATGGAACAGATTCAAGTTCGGTAAGTTGGAAATATGCAAATTCAGAAGCATGTGCATCGGCATACAGCGCCATTGCTGCTGGAGCTGCACTTGTTGCTGCCTTAGGTCTATTGGCGTTTTTAAGGCGAAGTCAATGA 1551 0.45 MSSHGGSSQRSCSFSNSPTRGRKKLPSSHHSTPDFTSRKSFPSPRTMGERTVKSLRLSKALTVPESTTVSEACRRMAARKVDALLLTDSNALLCGILTDKDIATRVIAREINLQETPVSKVMTRNPVFVLSDTLAVEALQKMVQGRFRHLPVVENGEVVAILDIAKCLYDAIARMERAAEKGKAIAAAVEGIEKHWGTSTPGSHSTFMETLREQIFKPSLSTIIPENSKVVTVSPTDSVLTTTKKMLELCASAAVVTVDDKTCGILTSKDILMRVIAQSLPPSSTLVEKVMTPNPEYGTVDTPIVDALHIMHDGKFLHLPVVNRDGIVVATVDVIHITHAAVATASQVGNTANLNNEVANSMIQKFWDSAMALAPNEEDEDSQSEASLKMISEGGETARSMSYLASSMHNAFSFKLQDRKGRLHRFTCDTRSLAEVITSIIQRVGEDIDPVNLPQILGLRLHLDYSGTHGYDGTDSSSVSWKYANSEACASAYSAIAAGAALVAALGLLAFLRRSQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2249 516 CDD CBS_pair_MUG70_2 227 343 - -
Aed5g2249 516 Pfam CBS domain 118 162 IPR000644 -
Aed5g2249 516 Pfam CBS domain 58 104 IPR000644 -
Aed5g2249 516 Pfam CBS domain 287 338 IPR000644 -
Aed5g2249 516 Pfam CBS domain 227 273 IPR000644 -
Aed5g2249 516 ProSiteProfiles CBS domain profile. 223 283 IPR000644 -
Aed5g2249 516 Gene3D - 27 187 IPR046342 -
Aed5g2249 516 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 30 452 IPR034896 -
Aed5g2249 516 CDD CBS_pair_MUG70_1 57 173 - -
Aed5g2249 516 MobiDBLite consensus disorder prediction 1 51 - -
Aed5g2249 516 ProSiteProfiles CBS domain profile. 291 348 IPR000644 -
Aed5g2249 516 SMART cbs_1 125 169 IPR000644 -
Aed5g2249 516 SMART cbs_1 294 342 IPR000644 -
Aed5g2249 516 SMART cbs_1 229 276 IPR000644 -
Aed5g2249 516 SMART cbs_1 59 107 IPR000644 -
Aed5g2249 516 SUPERFAMILY CBS-domain pair 49 165 IPR046342 -
Aed5g2249 516 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 458 504 IPR034896 -
Aed5g2249 516 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 30 452 - -
Aed5g2249 516 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 458 504 - -
Aed5g2249 516 ProSiteProfiles CBS domain profile. 122 180 IPR000644 -
Aed5g2249 516 SUPERFAMILY CBS-domain pair 228 340 IPR046342 -
Aed5g2249 516 Gene3D - 216 361 IPR046342 -
Aed5g2249 516 MobiDBLite consensus disorder prediction 1 22 - -
Aed5g2249 516 MobiDBLite consensus disorder prediction 30 44 - -
Aed5g2249 516 ProSiteProfiles CBS domain profile. 56 115 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2249 Aed-Chr5 24417797 24422823 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2249 - - gmx:100783514 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2249 5 24417797 24422823 Aed5g2249 5 24417797 24422823 ECH
Aed10g0795 10 6594638 6600680 Aed5g2249 5 24417797 24422823 PCT