Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3472 ATGTCAATTCAAAGTGTTTCTTCTCGACGGGGGGGTTCGTTGACGAACAGCCCCTCGCAGAACAAGAAGAAAGCCTCTGAGTATTCGTCGCTTGACCATACTCCTCGTAAAACGTTCCCGTCACCGCGCACCGTGGGAGAGCGAACTGTGAAATCATTGCGGCTTTCAAAGGCATTGACTGTTCCTGAAACAACCACCGTCTATGAAGCTTGCCGTAGGATGGCTGCTCGCAAAGTAGATGCTCTACTACTAACAGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGGATGTAACAACAAGAGTCATTGCTCGTGAGGTTAATCTCGAAGAAACAACCGTTTCCAAGGTTATGACAAGGAATCCAGTATTTGTCCTTTCCGACACTCTTGCTGTGGAAGCCCTCCAAAAAATGGTGCAAGGGAGGTTCAGACATTTACCTGTGGTGGAGAACGGAGAAGTTGTTGCCATACTTGACATAGCGAAGTGTTTGTATGATGCCATTGCCCGTATGGAAAGGGCAGCAGAGAAAGGAAGGGCAATTGCGGCTGCTGTTGAAGGTATCGAAAAACACTGGGGAACACCTACGTCTGGCACCAATTCGACGTTTTTTGAGACACTTCGCGAGCAGATATTCAAGCCTTCTTTGTCTACTATCATTCCTGAGAATTCAAAGGTTGTTACAGTTTCACCAACAGACTCGGTTTTGGCGGCAACAAAGAAGATGCTTGAACTTCGTGCAAGTTGTGCAGTTGTGACCGTTAATGACAAACCTTGTGGTATCCTTACTTCAAAGGATATCTTGATGCGGGTGATAGCACAAAGTCTTCCTCCAGCCTTTACTCTTGTTGAGAAGGTCATGACTCCAAGTCCAGAATGTGCAATAATTGATACACCAATAGTCGATGCACTTCACACTATGCATGATGGGAAATTTTTGCATCTTCCCGTTATTGATAGAGATGGTACTGTTGTTGCTACGGTTGATGTAATTCATATAACTCACGCGGCTGTAGCGACAGCTAGTCAGGTCGGAAACAGTGCTGGTTTTAATAATGAAGCAGCCAACTCCATGATACAAAAATTTTGGGATTCGGCCATGGCCTTAGTTCCAAATGGGGAGGACGACGATTCCCAAAGCGAAACTTCCTTGAAAATGATTCCTGAGGGAGGAGAATTAGGGAGAAACCTTTCGTATCTTGGGTCAAGCATGCCGAATGCATTTTCCTTCAAATTACAAGACAGGAAGGGTAGATTGCATAGATTCACATGCGATACTCGGAGCTTGACAGAGGTAATAACTTGCATCATTCATAGAGTCGGTGATGAAATTGACCCCACGAACCTGCCCCAAATTTTGTACGAAGATGAAGAAAATGATAAAGTTGTACTGGCTTCGGACAGTGATCTTGCCGCAGCTGTAGACCACGCAAAGGCGGTTGGTTTGAAGGGATTGAGATTGCATTTAGACTACTCAGGAACACGGGGTTATGGAAACGATTCAAGTTCAGTGAGTTTGAAATATGGTAATTCAGAATCATGGGCAACAGCATACAGCACCTTTGCTGCTGGAGCTGCAATTGTTGCTGCGTTGGGCCTAATGGCGTTTGTGAGGAGAAGTCAATAA 1632 0.4522 MSIQSVSSRRGGSLTNSPSQNKKKASEYSSLDHTPRKTFPSPRTVGERTVKSLRLSKALTVPETTTVYEACRRMAARKVDALLLTDSNALLCGILTDKDVTTRVIAREVNLEETTVSKVMTRNPVFVLSDTLAVEALQKMVQGRFRHLPVVENGEVVAILDIAKCLYDAIARMERAAEKGRAIAAAVEGIEKHWGTPTSGTNSTFFETLREQIFKPSLSTIIPENSKVVTVSPTDSVLAATKKMLELRASCAVVTVNDKPCGILTSKDILMRVIAQSLPPAFTLVEKVMTPSPECAIIDTPIVDALHTMHDGKFLHLPVIDRDGTVVATVDVIHITHAAVATASQVGNSAGFNNEAANSMIQKFWDSAMALVPNGEDDDSQSETSLKMIPEGGELGRNLSYLGSSMPNAFSFKLQDRKGRLHRFTCDTRSLTEVITCIIHRVGDEIDPTNLPQILYEDEENDKVVLASDSDLAAAVDHAKAVGLKGLRLHLDYSGTRGYGNDSSSVSLKYGNSESWATAYSTFAAGAAIVAALGLMAFVRRSQ* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3472 543 CDD CBS_pair_MUG70_1 55 171 - -
Vra7g3472 543 Pfam CBS domain 116 160 IPR000644 -
Vra7g3472 543 Pfam CBS domain 225 271 IPR000644 -
Vra7g3472 543 Pfam CBS domain 285 336 IPR000644 -
Vra7g3472 543 Pfam CBS domain 56 101 IPR000644 -
Vra7g3472 543 Gene3D - 36 185 IPR046342 -
Vra7g3472 543 Pfam PB1 domain 410 492 IPR000270 GO:0005515
Vra7g3472 543 MobiDBLite consensus disorder prediction 1 25 - -
Vra7g3472 543 ProSiteProfiles CBS domain profile. 221 280 IPR000644 -
Vra7g3472 543 SUPERFAMILY CBS-domain pair 226 338 IPR046342 -
Vra7g3472 543 SUPERFAMILY CAD & PB1 domains 403 496 - -
Vra7g3472 543 ProSiteProfiles CBS domain profile. 120 178 IPR000644 -
Vra7g3472 543 MobiDBLite consensus disorder prediction 1 48 - -
Vra7g3472 543 ProSiteProfiles CBS domain profile. 289 346 IPR000644 -
Vra7g3472 543 SUPERFAMILY CBS-domain pair 47 163 IPR046342 -
Vra7g3472 543 SMART PB1_new 409 494 IPR000270 GO:0005515
Vra7g3472 543 CDD PB1_MUG70 410 494 - -
Vra7g3472 543 CDD CBS_pair_MUG70_2 225 341 - -
Vra7g3472 543 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 24 529 - -
Vra7g3472 543 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 24 529 IPR034896 -
Vra7g3472 543 Gene3D - 215 351 IPR046342 -
Vra7g3472 543 ProSiteProfiles PB1 domain profile. 407 494 IPR000270 GO:0005515
Vra7g3472 543 ProSiteProfiles CBS domain profile. 54 113 IPR000644 -
Vra7g3472 543 SMART cbs_1 292 340 IPR000644 -
Vra7g3472 543 SMART cbs_1 57 105 IPR000644 -
Vra7g3472 543 SMART cbs_1 227 274 IPR000644 -
Vra7g3472 543 SMART cbs_1 123 167 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3472 Vra-Chr7 54087147 54094518 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3472 - - gmx:100783514 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3472 7 54087147 54094518 Vra7g3472 7 54087147 54094518 ECH
Vra5g0657 5 10314953 10320401 Vra7g3472 7 54087147 54094518 PCT