Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03427 ATGGCAAGTCGAAGGAGTAGTACGTCTTCCAGGAGAGTATCTGAGTCTGGAGTAGCTCGAAAATCGATTTCGTCTTTGCGTCCTGTCGGGTTAACAGGGGAGCGGACAGTGAAATCACTGCGACTTTCAAGGGCCTTGACAGTACCCGAAACAACAACTATATATGAAGCTTGTCGTCGGATGGCTGCTCGTAGGGTGGATGCTCTATTACTAACCGACTCTAATGGTTTGCTTTGTGGAATCCTCACAGCCAAGGATATATCAACAAAAGTTGTTGCCCAAGAGATTAATCCTGAAGATACACCTGTTTCCAAGGTTATGACAAGGAATCCGTTATTTGTCCTTTCTGAAACTCTTGCTGTGGAAGCCCTCCAAAAGATGGTGCAAGGGAAGTTTAGGCATTTACCTGTGGTTGAGAATGGAGAAGTTTTGGCTTTACTCGATATCACAAAGTGTTTGTATGATGCCATAGCACGAATGGAAAGGGCTGCTGAGAAAGGTAAAGCAATTGCAGCAGCTGTTGAAGGAGTTGAAAAACATTGGGGATCAACTAATTCTGACTCTAATTCATCCTTCATTGAGGCTCTTCGGGAACAGATATTCAAACCATCATTGTCCACAATCTTTCCTGAGAATTCAAAGATGGTAAAAGTTGCACCAACAGACTCAGTTTTGAAGACAACAAAGAAGATGGTTGAGCTTCATGCAAGTTGTGCTGTTGTGACTATTGATGGCAAACCCCAAGGCATCGTTACTTCAAAGGATATCTTGATGCGGGTAATTGCACAAAATCTCCCACCATCGTCGACTCCTGTTGAGAAGGTTATGACTCCAAATCCAGAATGCACAGTAATTGATACACCAATTGTTGATGCACTTCATATTATGCATGATGGAAAATTTTTACATCTTCCAGTGGTTGATAAAGATGGAATTGTTGTTGCTGTGGTTGATGTGATTCATGTGACTCATGCTGCTGTGGCTACAGTTAGTCAGGTTGGAAACAACGAAGCTGGAACCTCCCTAATGCACAGATTTTGGGATTCAGCAATGGCCTTATCTCCAAATGACGATGATGACGAAACACGGAGTGAGAACTCCTTCAAAATAGGTTCTGATGGTGGTGAGACAGGGAGATCGGTTCCTTATTCTCCTGCAAGCATGCCCTATACATTTTCCTTCAAAGTACAAGATAAGAAGGGCAGAATGCATAGATTCACATGCGATACCCGCAGCATGACGGAGGTTATATCTTCAATCCTTCAGAGACTTGGTACTGATATTGACCCTAACAATCTGCCTCAAATTCTGTATGAAGATGAAGATCACGATAAAGTTGTATTGGCTTCAGACAGTGATCTTGCCGCAGCTGTGGACCATGCAAGGACAACTGGTTTGAAGGGATTGAAATTGTATTTGGACTACGAAGGAACAGAAGATGGTAAAAGGAAAGGGTCACGTTCAGGAAGTTTAGATCATTCATATTCAGATGCATGGGCCTCAGCATATAGTGGTGCTGCTGCTGGAGCTGCTCTTGTTGCTGGTTTAGGCCTATTAACATACTTGAAGCGGGCATGA 1578 0.4322 MASRRSSTSSRRVSESGVARKSISSLRPVGLTGERTVKSLRLSRALTVPETTTIYEACRRMAARRVDALLLTDSNGLLCGILTAKDISTKVVAQEINPEDTPVSKVMTRNPLFVLSETLAVEALQKMVQGKFRHLPVVENGEVLALLDITKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGSTNSDSNSSFIEALREQIFKPSLSTIFPENSKMVKVAPTDSVLKTTKKMVELHASCAVVTIDGKPQGIVTSKDILMRVIAQNLPPSSTPVEKVMTPNPECTVIDTPIVDALHIMHDGKFLHLPVVDKDGIVVAVVDVIHVTHAAVATVSQVGNNEAGTSLMHRFWDSAMALSPNDDDDETRSENSFKIGSDGGETGRSVPYSPASMPYTFSFKVQDKKGRMHRFTCDTRSMTEVISSILQRLGTDIDPNNLPQILYEDEDHDKVVLASDSDLAAAVDHARTTGLKGLKLYLDYEGTEDGKRKGSRSGSLDHSYSDAWASAYSGAAAGAALVAGLGLLTYLKRA 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03427 525 ProSiteProfiles PB1 domain profile. 389 476 IPR000270 GO:0005515
Vifa2g03427 525 ProSiteProfiles CBS domain profile. 211 268 IPR000644 -
Vifa2g03427 525 MobiDBLite consensus disorder prediction 353 383 - -
Vifa2g03427 525 Gene3D - 26 172 IPR046342 -
Vifa2g03427 525 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 22 461 - -
Vifa2g03427 525 Pfam PB1 domain 391 474 IPR000270 GO:0005515
Vifa2g03427 525 CDD PB1_MUG70 392 475 - -
Vifa2g03427 525 ProSiteProfiles CBS domain profile. 41 99 IPR000644 -
Vifa2g03427 525 SUPERFAMILY CBS-domain pair 214 327 IPR046342 -
Vifa2g03427 525 Gene3D - 204 330 IPR046342 -
Vifa2g03427 525 Pfam CBS domain 272 322 IPR000644 -
Vifa2g03427 525 Pfam CBS domain 213 258 IPR000644 -
Vifa2g03427 525 Pfam CBS domain 103 147 IPR000644 -
Vifa2g03427 525 Pfam CBS domain 43 87 IPR000644 -
Vifa2g03427 525 ProSiteProfiles CBS domain profile. 276 337 IPR000644 -
Vifa2g03427 525 SMART PB1_new 391 476 IPR000270 GO:0005515
Vifa2g03427 525 Gene3D - 392 473 - -
Vifa2g03427 525 SUPERFAMILY CBS-domain pair 34 151 IPR046342 -
Vifa2g03427 525 CDD CBS_pair_MUG70_1 42 158 - -
Vifa2g03427 525 SUPERFAMILY CAD & PB1 domains 385 478 - -
Vifa2g03427 525 SMART cbs_1 214 261 IPR000644 -
Vifa2g03427 525 SMART cbs_1 279 327 IPR000644 -
Vifa2g03427 525 SMART cbs_1 44 92 IPR000644 -
Vifa2g03427 525 SMART cbs_1 110 154 IPR000644 -
Vifa2g03427 525 ProSiteProfiles CBS domain profile. 107 165 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03427 Vifa-Chr2 990224886 990231758 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03427 - - gmx:100785816 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03427 2 990224886 990231758 Vifa2g03427 2 990224886 990231758 ECH
Vifa2g03427 2 990224886 990231758 Vifa2g03427 2 990224886 990231758 PCT