Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0098 ATGGCTAGTCACGGCGGTTCATCCAGGAAAAGTTTGACTTTGTCCATGCCATCGCAGGGAAAGAAAAAAGCTTCTGAGAATGGAGCTGGCCCCGATAGCGCTCGAAAATCTCTTGCCTCTGCTCGTTCCATGGGACTGACTGGAGAGCGTACAGTGAAGAGATTGCGACTGTCAAGGGCCCTGACAGTTCCTGACACCACAAGTATTTATGAAGCTTGCCGCCGTATGGCTGCTCGTAGAGTTGATGCCTTATTGTTAACTGATTCAAATGCGTTACTTTGTGGAATCCTTACAGACAAGGACATAGCAACAAGAGTCATTGCTCGTGAACTTAATCTTGAGGAAACACCAGTCTCCAAAGTTATGACAAGGAACCCAATTTTTGTTCTTTCTGATACTCTTGCTGTGGAAGCCCTGCAAAAGATGGTGCAAGGAAAGTTCAGACATTTGCCTGTTGTAGAGAATGGGGAGGTCATTGCTTTACTAGACATAGCAAAGTGTTTATATGATGCTATTGCTCGAATGGAGAGGGCAGCTGAAAAGGGAAAAGCCATTGCTGCTGCTGTTGAAGGAGTTGAAAAAAATTGGGGGACATCTCTCTCTGGTCCTAGCACATTCATTGAGACACTTCGAGAGAGGATGTTTAGGCCTGCTTTGTCCACGATCATCCCCGAGAATTCAAAGGTTGTAACAGTCTCACCAACTGACACAGTTCTAACAGCAGCAAAGAAGATGCTTGAACTTAAATTAAGTTGTGCAGTCGTAGCAGTTGAAAACAGACCAAAGGGGATTCTAACTTCAAAGGATATCCTGATGCGGGTCATAGCACAAAATCTTCATCCAGAATCCACTCCAGTGGAGAAGGTCATGACTCCAAATCCAGAATGTGCAACAATTGATACACCCATTGTTGATGCCCTACATACCATGCATGATGGGAAATTTTTACACCTTCCTGTCATTGATAGAGATGGTGGTGTAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTGTGGCTACAGTGGGAGGCAATGCTGGAGTTAATAATGAGGCTGCAAGCAGTCTGATGCAGAAGTTCTGGGACTCAGCCATGGCATTAGGAACTGATGATGACGAAGAAACACGGAGTGAGGGTTCCTTGAAATTGGCTTCTGAAGGAACTGAAATAGGGAGAACTCTTCCTTATACTTCATCAGCCATGCATAACACCTTTGCTTTCAAAATTGAAGATAAAAGAGGACGGATGCATAGGTTTACCTGTGATACCCGGAGTTTGACAGATGTCATAACTTCAATCCTTCAGAGAGTGGGTGATGACATCGATCGCAACAACCTGCCGCAAATTCTGTATGAAGATGAAGACCATGACAAAGTAGTACTCGCATCAGATAATGATCTTGTGGCAGCCATGGAGCATGCTAGGTTAGCAGGTTGGAAGGGTTTAAGACTACATTTAGATTACTCGGGGACCCGCCCTCTTAGAAGGGACTCTGGAACTGGAGGTTTGGAGTATGCTCAGCGAGAAGCATGGGCTTCTGCATACAGTGCCGTTGCAGCAGGCGCCGCATTTGTAGCTGGGATGGGCTTATTAGCCTACCTGAAGAGATCCAGTAACTGA 1626 0.4551 MASHGGSSRKSLTLSMPSQGKKKASENGAGPDSARKSLASARSMGLTGERTVKRLRLSRALTVPDTTSIYEACRRMAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPIFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKNWGTSLSGPSTFIETLRERMFRPALSTIIPENSKVVTVSPTDTVLTAAKKMLELKLSCAVVAVENRPKGILTSKDILMRVIAQNLHPESTPVEKVMTPNPECATIDTPIVDALHTMHDGKFLHLPVIDRDGGVVAVADVIHITHAAVATVGGNAGVNNEAASSLMQKFWDSAMALGTDDDEETRSEGSLKLASEGTEIGRTLPYTSSAMHNTFAFKIEDKRGRMHRFTCDTRSLTDVITSILQRVGDDIDRNNLPQILYEDEDHDKVVLASDNDLVAAMEHARLAGWKGLRLHLDYSGTRPLRRDSGTGGLEYAQREAWASAYSAVAAGAAFVAGMGLLAYLKRSSN* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0098 541 ProSiteProfiles CBS domain profile. 222 282 IPR000644 -
Vvi17g0098 541 ProSiteProfiles CBS domain profile. 290 349 IPR000644 -
Vvi17g0098 541 MobiDBLite consensus disorder prediction 1 22 - -
Vvi17g0098 541 CDD PB1_MUG70 407 491 - -
Vvi17g0098 541 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 40 474 - -
Vvi17g0098 541 SUPERFAMILY CAD & PB1 domains 399 493 - -
Vvi17g0098 541 Gene3D - 225 366 IPR046342 -
Vvi17g0098 541 ProSiteProfiles CBS domain profile. 122 180 IPR000644 -
Vvi17g0098 541 SMART PB1_new 406 491 IPR000270 GO:0005515
Vvi17g0098 541 CDD CBS_pair_MUG70_1 57 173 - -
Vvi17g0098 541 SUPERFAMILY CBS-domain pair 227 339 IPR046342 -
Vvi17g0098 541 Gene3D - 403 488 - -
Vvi17g0098 541 Pfam CBS domain 59 104 IPR000644 -
Vvi17g0098 541 Pfam CBS domain 226 272 IPR000644 -
Vvi17g0098 541 Pfam CBS domain 286 330 IPR000644 -
Vvi17g0098 541 Pfam CBS domain 118 162 IPR000644 -
Vvi17g0098 541 ProSiteProfiles CBS domain profile. 56 115 IPR000644 -
Vvi17g0098 541 SMART cbs_1 228 275 IPR000644 -
Vvi17g0098 541 SMART cbs_1 59 107 IPR000644 -
Vvi17g0098 541 SMART cbs_1 293 338 IPR000644 -
Vvi17g0098 541 SMART cbs_1 125 169 IPR000644 -
Vvi17g0098 541 Gene3D - 33 187 IPR046342 -
Vvi17g0098 541 MobiDBLite consensus disorder prediction 1 45 - -
Vvi17g0098 541 Pfam PB1 domain 407 489 IPR000270 GO:0005515
Vvi17g0098 541 SUPERFAMILY CBS-domain pair 49 166 IPR046342 -
Vvi17g0098 541 CDD CBS_pair_MUG70_2 226 342 - -
Vvi17g0098 541 ProSiteProfiles PB1 domain profile. 404 491 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0098 Vvi-Chr17 851469 859341 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0098 - - vvi:100242422 983.786