Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01437 TTGAAATTCTCTACTTCTCTATCTCTTCTCTGTGTTCCTTTCCTTCTCCACGCTTCTCTTTCTCTCTCTAGGGTTGCCTTCTTCCTCTCTCATTTGCCCCTCTTTTTCCTCGCCGGCCGGAAACCTTTTTCCGGCAATATTTCCGGCCATCGAACCTTGGGCCGCCTTCAACTCAACTTCTCCCGATATTGGAGCAGAGGTGAGATGGCAAGTCAAACCGGTGCCTCTCGAAGGAGTATTTCCTCGACGAGAAAAGCCTCCGAATCAGGAGTGTCTCATGCTACTTCTCGAAAATCAATTACCTCTTTGCGACCTGTGGCATTAGCAGGAGAGCGGACTGTGAAATCTTTGCGACTTACAAAGGCCCTGACAGTACCTGAAACAACAACCATCTATGAAGCATGTCGTCGGATGGCTGCCCGTAGGGTGGATGCTCTATTACTAACTGATTCTAATGCTTTACTCTGTGGAATCCTCACGGACAAGGATATTGCAACAAGAGTTATTGCCAAAGAGATTAACATTGAAAACACACCAGTTTCCAAAGTCATGACTAGGAATCCAGTATTTGTCCTTTCTGAAACTCTTGCTGCGGAAGCCCTTCAAAAGATGGTGCAAGGGAGATTCAGACATTTACCTGTGGTGGAGAATGGAGAAGTTTTGGCTTTACTAGACATAGCAAAGTGTTTGCATGATGCCATTGCCCGTATGGAAAGGGCAGCTGAGAAAGGAAAAGCAATTGCAGCAGCTGTTGAAGGAGTCGAAAAACACTGGGGAACATCAGAGTCTAATACATCATTCATTGAAACTCTTCGAGAGCAAATATTCAAGCCATCATTGTCTACAATAATTTCTGAGAATTCAAAGCTAGTAACAGTATCACCAACGGACTCAGTTCTGACAACAACAAAGAAGATGGTTGAATTTCATGAGAGTTGCGCTGTTGTGACAGTTAATGACAAACCTCGTGGCATCTTTACTTCAAAAGATATCTTGTTGCGGGTAATTGCACAAAATCTTTCTCCTGAATCAACTCCCATTGAGAAGGTTATGACACCAAATCCAGAATGTGTAGTAATTGATACACCCATTGTTGATGCACTTCACACTATGCATGACGGGAAATTTTTGCATCTTCCTGTGATTGATAGAGATGGCAGTGTAGTTGCTGTGGTCGATGTGATCCATGTTACTCATGCCGCCGTGGCGACAGTAAGTCAGGTGTATTATCTATCCTGGAGTTTGGAACTCACTACTATACTATTGTTGGAAAGTAATTATACCATTTTCCTCCACAAACAGGTTGGGAATAATGAAGCTGCAACCACCTTGATGCAAAGATTTTGGGATTCAGCCATGGCCTTAACTCCAAATGATGATGATGACGATACACGAAGTGACAGCTCCTTGAAATTGGCTTCTGATGGAGGAGAAACGGGGAGGTCCATTCCTTATCTTTCATCAAGCATGGCTAATACATTTTCCTTCAAAATACAAGATAAAAAGGGCAGAATGCACAGATTCACATGTGATACCCGGAGCATGAAAGAGGTTATAACTTCAATCATTCAGAGACTTGGTGATGATATTGATCCTAACAACGTACCCCAAATTCTGTATGAGGATGAAGATCATGATAAAGTTGTATTGGCTTCAGACAATGATCTTGCAACTGCTGTGGATCACGCCCGGACAGCTGGTTTGAAGGGGTTGAAATTGCATTTAGACTACGCAGGACCACGTGGTAATGGGAAAAGTTCGCGTTCAGGAAGTTATGCTTATTCAGATGCATGGGCCTCTGCATATAGTGCCGCTGCAGCTGGAGCTGCACTTGTTGCTGGCTTAGGCATATTAACATACTTGAAGCGAGTTTGA 1875 0.4352 MKFSTSLSLLCVPFLLHASLSLSRVAFFLSHLPLFFLAGRKPFSGNISGHRTLGRLQLNFSRYWSRGEMASQTGASRRSISSTRKASESGVSHATSRKSITSLRPVALAGERTVKSLRLTKALTVPETTTIYEACRRMAARRVDALLLTDSNALLCGILTDKDIATRVIAKEINIENTPVSKVMTRNPVFVLSETLAAEALQKMVQGRFRHLPVVENGEVLALLDIAKCLHDAIARMERAAEKGKAIAAAVEGVEKHWGTSESNTSFIETLREQIFKPSLSTIISENSKLVTVSPTDSVLTTTKKMVEFHESCAVVTVNDKPRGIFTSKDILLRVIAQNLSPESTPIEKVMTPNPECVVIDTPIVDALHTMHDGKFLHLPVIDRDGSVVAVVDVIHVTHAAVATVSQVYYLSWSLELTTILLLESNYTIFLHKQVGNNEAATTLMQRFWDSAMALTPNDDDDDTRSDSSLKLASDGGETGRSIPYLSSSMANTFSFKIQDKKGRMHRFTCDTRSMKEVITSIIQRLGDDIDPNNVPQILYEDEDHDKVVLASDNDLATAVDHARTAGLKGLKLHLDYAGPRGNGKSSRSGSYAYSDAWASAYSAAAAGAALVAGLGILTYLKRV 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01437 624 ProSiteProfiles CBS domain profile. 184 242 IPR000644 -
Vimu10g01437 624 MobiDBLite consensus disorder prediction 74 98 - -
Vimu10g01437 624 SUPERFAMILY CAD & PB1 domains 485 575 - -
Vimu10g01437 624 SUPERFAMILY CBS-domain pair 289 402 IPR046342 -
Vimu10g01437 624 ProSiteProfiles CBS domain profile. 351 408 IPR000644 -
Vimu10g01437 624 MobiDBLite consensus disorder prediction 456 478 - -
Vimu10g01437 624 Pfam CBS domain 287 333 IPR000644 -
Vimu10g01437 624 Pfam CBS domain 119 166 IPR000644 -
Vimu10g01437 624 Pfam CBS domain 348 397 IPR000644 -
Vimu10g01437 624 Pfam CBS domain 180 224 IPR000644 -
Vimu10g01437 624 CDD PB1_MUG70 494 578 - -
Vimu10g01437 624 Pfam PB1 domain 493 576 IPR000270 GO:0005515
Vimu10g01437 624 Gene3D - 90 249 IPR046342 -
Vimu10g01437 624 Gene3D - 259 410 IPR046342 -
Vimu10g01437 624 ProSiteProfiles CBS domain profile. 118 175 IPR000644 -
Vimu10g01437 624 ProSiteProfiles PB1 domain profile. 491 578 IPR000270 GO:0005515
Vimu10g01437 624 SMART PB1_new 493 578 IPR000270 GO:0005515
Vimu10g01437 624 ProSiteProfiles CBS domain profile. 284 343 IPR000644 -
Vimu10g01437 624 SUPERFAMILY CBS-domain pair 111 228 IPR046342 -
Vimu10g01437 624 Gene3D - 492 575 - -
Vimu10g01437 624 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 86 562 - -
Vimu10g01437 624 SMART cbs_1 289 336 IPR000644 -
Vimu10g01437 624 SMART cbs_1 354 402 IPR000644 -
Vimu10g01437 624 SMART cbs_1 187 231 IPR000644 -
Vimu10g01437 624 SMART cbs_1 121 169 IPR000644 -
Vimu10g01437 624 CDD CBS_pair_MUG70_1 119 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01437 Vimu-Chr10 15319265 15324135 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01437 - - gmx:100785816 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01437 10 15319265 15324135 Vimu10g01437 10 15319265 15324135 ECH
Vimu10g01437 10 15319265 15324135 Vimu11g04362 11 64936322 64943648 PCT