Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01727 ATGGCAAGTCAAAGTGGTGCCTCTCGAAGGAGTATTTCGTCTTCCAAGAGAGCTTCAGAGTCTACTACTGCTCGAAAATCTCTTTCGTCTTTGCGCCCCGTGGGATTAACGGGAGAGCGGACTGTGAAATCATTGCGACTTACAAAGGCCTTGACAGTACCTGAAACAACAACTATCTATGAAGCTTGCCGTCGGATGGCTGCCCGTAGAGTGGATGCTCTATTACTAACTGATTCTAATGCTTTACTCTGTGGAATCCTCACGGACAAGGATATAGCAACAAGAGTTATTGCCCGAGAGATCAATCTTGAAGACACACCTGTTTCCAAGGTTATGACAAGAAATCCTGTATTTGTCCTTTCTGAAACTCTTGCTGTGGAAGCCCTTCAAAAGATGGTGCAAGGGAAATTCAGACATCTTCCTGTGGTGGAGAATGGAGAAGTTTTGGCTATACTTGACATAGCAAAGTGTTTGTATGATGCCATTGCTCGTATGGAAAGGGCAGCTGAGAAAGGAAAAGCAATTGCAGCAGCTGTTGAAGGAGTTGAAAAACACTGGGGAACATCTGGTCCTGACTCTAATACATCATTCATTGAGACTCTCCGGGAGAAGATATTCAAGCCATCATTGTCCACAATCATTCCTGAGAATTTAAAGATTGTAACAGTTTCACCAACAGACTCAGTTTTGACAACAACAAAGAAGATGGTTGAAATTCGTTCAAGTTGTGCTGTTGTGACAGTTGATGGAAAACCTCATGGCATCTTTACTTCTAAGGACATCTTGATGCGGGTAATTGCACAAAATCTTTCTCCAGCATCAACTCCTGTTGAGAAGGTCATGACTCCAAATCCAGAGTGCACAGTGATTGATACACCGATTGTTGATGCACTTCACATTATGCATGATGGAAAATTTTTGCATCTTCCTGTGGTTGATAGAGATGGCACTGTAGTTGCTGTGGTTGATGTGATTCATGTGACTCATGCTGCTGTGGCGACAGTAAGTCAGGTTGGAAACAATGAAGCTGCAACCTCATTGATGCAAAGATTTTGGGATTCAGCCATGGCATTAACTCCAAATGATGATGATGACGAAACACGAAGTGACAGTTCCTTGAAAATGGCTTCAGAGGGAGGAGAAACGGGGAGATCCTTTCCTTATTTGTCAAGCATGCCCAATACATTTTCCTTCAAAATACAAGATAAGAAAGGCAGAATGCATAGATTCACATGTGATACCCGTAGCTTGTCAGAGGTTATAACTTCAATCCTTCAGAGACTTGGTGATGATATTGACCCTAACAACCTGCCTCAAATTCTGTATGAAGACGAAGATCATGATAAAGTTGTATTAGCTTCAGACAGTGATCTTGCTGCAGCTGTGGACCATGCAAGGACGGCTGGTTTGAAGGGATTGAAATTGCATTTAGACTACGAAGGAACACGTGGGTCAGGGAGAGGTTCTCGTTCGGGAAGTTTGGAGCATGCTAATTCAGATGCATGGGCCTCAGCATATAGCGCCTATGCTGCTGGAGCTGCACTTGTTGCTGGCTTAGGTCTATTAACATACTTGAAGCGAGTTTGA 1587 0.4335 MASQSGASRRSISSSKRASESTTARKSLSSLRPVGLTGERTVKSLRLTKALTVPETTTIYEACRRMAARRVDALLLTDSNALLCGILTDKDIATRVIAREINLEDTPVSKVMTRNPVFVLSETLAVEALQKMVQGKFRHLPVVENGEVLAILDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSGPDSNTSFIETLREKIFKPSLSTIIPENLKIVTVSPTDSVLTTTKKMVEIRSSCAVVTVDGKPHGIFTSKDILMRVIAQNLSPASTPVEKVMTPNPECTVIDTPIVDALHIMHDGKFLHLPVVDRDGTVVAVVDVIHVTHAAVATVSQVGNNEAATSLMQRFWDSAMALTPNDDDDETRSDSSLKMASEGGETGRSFPYLSSMPNTFSFKIQDKKGRMHRFTCDTRSLSEVITSILQRLGDDIDPNNLPQILYEDEDHDKVVLASDSDLAAAVDHARTAGLKGLKLHLDYEGTRGSGRGSRSGSLEHANSDAWASAYSAYAAGAALVAGLGLLTYLKRV. 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01727 528 ProSiteProfiles CBS domain profile. 46 106 IPR000644 -
Seca4g01727 528 MobiDBLite consensus disorder prediction 358 386 - -
Seca4g01727 528 SMART PB1_new 395 480 IPR000270 GO:0005515
Seca4g01727 528 ProSiteProfiles PB1 domain profile. 393 480 IPR000270 GO:0005515
Seca4g01727 528 CDD PB1_MUG70 396 479 - -
Seca4g01727 528 Gene3D - 397 477 - -
Seca4g01727 528 Pfam PB1 domain 395 478 IPR000270 GO:0005515
Seca4g01727 528 ProSiteProfiles CBS domain profile. 112 170 IPR000644 -
Seca4g01727 528 ProSiteProfiles CBS domain profile. 213 274 IPR000644 -
Seca4g01727 528 ProSiteProfiles CBS domain profile. 281 342 IPR000644 -
Seca4g01727 528 SUPERFAMILY CAD & PB1 domains 388 482 - -
Seca4g01727 528 Pfam CBS domain 47 94 IPR000644 -
Seca4g01727 528 Pfam CBS domain 277 327 IPR000644 -
Seca4g01727 528 Pfam CBS domain 108 152 IPR000644 -
Seca4g01727 528 Pfam CBS domain 219 263 IPR000644 -
Seca4g01727 528 Gene3D - 21 177 IPR046342 -
Seca4g01727 528 Gene3D - 195 343 IPR046342 -
Seca4g01727 528 CDD CBS_pair_MUG70_1 47 163 - -
Seca4g01727 528 SMART cbs_1 219 266 IPR000644 -
Seca4g01727 528 SMART cbs_1 49 97 IPR000644 -
Seca4g01727 528 SMART cbs_1 284 332 IPR000644 -
Seca4g01727 528 SMART cbs_1 115 159 IPR000644 -
Seca4g01727 528 SUPERFAMILY CBS-domain pair 39 155 IPR046342 -
Seca4g01727 528 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 16 465 - -
Seca4g01727 528 MobiDBLite consensus disorder prediction 1 30 - -
Seca4g01727 528 SUPERFAMILY CBS-domain pair 219 331 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01727 Seca-Chr4 27963275 27971851 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01727 - - gmx:100785816 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01727 4 27963275 27971851 Seca4g01727 4 27963275 27971851 ECH
Seca4g01727 4 27963275 27971851 Seca12g06438 12 156456523 156462408 PCT