Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1167 ATGATGTCAAGTCAAGGCGGTACTTCTCGAAAGAGCGTTTCGTTGACGAATAGCCCTACGCGGGGAAGGAGGAAAGCTTATAAGCATGAGTTTAGTGCTCGCAAATACAACACGTCACCGCGCGCCACCACGGGAGAGAGAACTGTGAAATCATTGCGGCTTTCAAAGGCATTGACAGTTCCTGAAACAACAACCATCTATGAAGCTTGTCGTAGGATGGCTGCACGCAAAGTAGATGCTTTATTACTAACTGATTCCAATGCTTTGCTCTGTGGAATCCTCACTGACAAGGATATAGCAACAAGAGTTATTGCCCGTGAGATGAATCTCGAAGAAACAACTGTTTCCAAGGTTATGACAAGGAATCCAGTGTTTGTTCTTTCTGACACTCTTGCTGCGGAAGCCCTCCAGAAGATGGTGCAAGGGAGGTTTAGACATTTACCTGTGGTGGAGAATGGAGAAGTTATTGCCATTCTTGACATAGCAAAGTGTTTGTATGATGCCATTGCCCGTATGGAAAGGGCTGCTGAGAAGGGAAAGGCAATTGCAGCAGCTGTTGAAGGAATCGAAAAACACTGGGGAACATCTCCTTCTGCTTCTGGCTCCAATTCGTCATTCATTGAGACTCTTCGCGAGCAGATATTTAAGCCATCTTTGTCTACAATTATTCCTGAGAATTCAAAGGTAGTAACAGTCTCACCAACGGACTCAGTTTTGACAACAACAAAGAAGATGCTTGAACTCCGTGCAAGTTCTGCTGTTGTGACAGTTGATGGCAAACCTCGTGGTATCCTTACTTCACAGGATATCTTGATGCGGGTAATAGCACAAGGTCTTCCACCATCTTCAACTCTTGTTGAGAAGGTCTTGACTCCAAATCCAGAATGGGGAACAATTGATACGCCAATTGTCGATGCCCTTCACACGATGCATGATGGAAAGTTTTTGCATCTTCCTGTGGTTGATAGAGATGGCTGTGTTATTGCTATGGTTGACGTGATTCATATCACTCACGCGGCCGTGGCGACAGCTAGTCAGGTTGGAAATATTGCCAATTTGAACAATGAAGCTGCCAACTCCGTGATACAAAAATTTTGGGATTCGGCCATGGCTTTAACTCCAAATGATGATGAAGACGATTCACATAGCGACAGTTCCTTGAAAATGATATCAGAGGGAGAAACAGTGGGATCCATTTCTTATCTTGCGTCAAACGTGCCGAACTCATTTTCCTTCAAAATACAAGATAAGAAGGGCAGATTGCATCGGTTCGCAAGCGATACTCGGAGCTTGGCAGAGGTTATAACTTCCATAGTTCAGAGAGTCGGTGATGATATTGACCCCAAGAACTTGCCCCAAATTTTGTATGAGGATGAAGAACATGATAAAGTTGTGCTGGCTTCAGACAGTGATCTAACTGCAGCTGTGGATCACGCGAAGACAGCTGGTTTGAAGGGATTGAGATTGCACTTAGACTACCCTGGAGCGCGTGATTATGGAACTGATTCTAGTTCGGGGAATTTGGAAAATGCTAGTTCAGAAGCATGGTCCTCAGCATACAGCGCAGCTGCTGCTGGAGCTGCAATCGTAGCTTGCATAGGCCTATTGGCATACATGAAGCGAAGTCAATGA 1632 0.4504 MMSSQGGTSRKSVSLTNSPTRGRRKAYKHEFSARKYNTSPRATTGERTVKSLRLSKALTVPETTTIYEACRRMAARKVDALLLTDSNALLCGILTDKDIATRVIAREMNLEETTVSKVMTRNPVFVLSDTLAAEALQKMVQGRFRHLPVVENGEVIAILDIAKCLYDAIARMERAAEKGKAIAAAVEGIEKHWGTSPSASGSNSSFIETLREQIFKPSLSTIIPENSKVVTVSPTDSVLTTTKKMLELRASSAVVTVDGKPRGILTSQDILMRVIAQGLPPSSTLVEKVLTPNPEWGTIDTPIVDALHTMHDGKFLHLPVVDRDGCVIAMVDVIHITHAAVATASQVGNIANLNNEAANSVIQKFWDSAMALTPNDDEDDSHSDSSLKMISEGETVGSISYLASNVPNSFSFKIQDKKGRLHRFASDTRSLAEVITSIVQRVGDDIDPKNLPQILYEDEEHDKVVLASDSDLTAAVDHAKTAGLKGLRLHLDYPGARDYGTDSSSGNLENASSEAWSSAYSAAAAGAAIVACIGLLAYMKRSQ* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1167 543 Gene3D - 218 344 IPR046342 -
Apr2g1167 543 SMART PB1_new 409 494 IPR000270 GO:0005515
Apr2g1167 543 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 22 529 - -
Apr2g1167 543 ProSiteProfiles CBS domain profile. 222 282 IPR000644 -
Apr2g1167 543 ProSiteProfiles CBS domain profile. 290 347 IPR000644 -
Apr2g1167 543 CDD CBS_pair_MUG70_1 54 170 - -
Apr2g1167 543 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 22 529 IPR034896 -
Apr2g1167 543 CDD PB1_MUG70 410 494 - -
Apr2g1167 543 MobiDBLite consensus disorder prediction 1 46 - -
Apr2g1167 543 ProSiteProfiles CBS domain profile. 119 177 IPR000644 -
Apr2g1167 543 Pfam PB1 domain 410 492 IPR000270 GO:0005515
Apr2g1167 543 Pfam CBS domain 55 101 IPR000644 -
Apr2g1167 543 Pfam CBS domain 226 272 IPR000644 -
Apr2g1167 543 Pfam CBS domain 299 337 IPR000644 -
Apr2g1167 543 Pfam CBS domain 115 159 IPR000644 -
Apr2g1167 543 SUPERFAMILY CAD & PB1 domains 400 491 - -
Apr2g1167 543 MobiDBLite consensus disorder prediction 1 21 - -
Apr2g1167 543 ProSiteProfiles CBS domain profile. 53 112 IPR000644 -
Apr2g1167 543 SUPERFAMILY CBS-domain pair 227 339 IPR046342 -
Apr2g1167 543 CDD CBS_pair_MUG70_2 226 342 - -
Apr2g1167 543 ProSiteProfiles PB1 domain profile. 407 494 IPR000270 GO:0005515
Apr2g1167 543 SUPERFAMILY CBS-domain pair 46 163 IPR046342 -
Apr2g1167 543 Gene3D - 23 184 IPR046342 -
Apr2g1167 543 SMART cbs_1 56 104 IPR000644 -
Apr2g1167 543 SMART cbs_1 293 341 IPR000644 -
Apr2g1167 543 SMART cbs_1 228 275 IPR000644 -
Apr2g1167 543 SMART cbs_1 122 166 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1167 Apr-Chr2 17911431 17916122 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1167 - - gmx:100783514 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1167 2 17911431 17916122 Apr2g1167 2 17911431 17916122 ECH
Apr1g0305 1 3566042 3572185 Apr2g1167 2 17911431 17916122 PCT