Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0179 . . . . . . . . . Amo12g2054 Amo02g2232 . . . . . . . . . . . . . . Gso3g0585 Lal14g0217 . . . . . . Lasa7g02197 . . . . Lja3g3194 . Mepo2g00633 . . Mtr4g0588 . . . . Pste6g00367 . . . Spst4g02886 . . . . . . . Vimu9g01253 . . .
Pvu10g0180 . . . Aed2g1425 . . . . . . . . . . . . . . . . . . . . . . . . . . Lan1g0801 . Lapu10g01458 . . . . . Lja3g4717 . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0181 . . . . . . . . . . . . . . . . . Cca01g02427 . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01639 . . . . . . . . . . . . Vian1g02524 . Vimu9g01252 Viun3g02914 . Vra9g0951
Pvu10g0182 . . . . . . . . . Amo12g2053 Amo02g2230 . . . . . . Cca01g01711 . . . . Gma03g00592 . . Gso3g0586 . . . . . . . Lasa7g00525 . . . . Lja3g3193 . Mepo2g00634 Mesa13g04838 . Mtr4g0589 . . . Psa7g5444 . Pumo7g01323 . . Spst4g01484 Ssu4g2211 . Tpr4g0869 Trre7g00612 Tsu06g00559 . . . Viun10g00742 . .
Pvu10g0183 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01640 . . Pste6g00364 . . . . . . . . . . . . . . .
Pvu10g0184 . . . Aed2g1428 . Ahy12g0437 Ahy2g0394 . . . . . . . . . . . . . . . Gma03g00611 . . Gso3g0600 . . . . Lan1g0800 . Lapu10g01459 . . . . . Lja3g4716 . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0185 . . . . . Ahy12g0436 Ahy2g0393 . . . . . . . . . . . . . . . . . . Gso3g0601 . . . . . . Lapu10g01460 . . . . . Lja3g4715 . . . . . . Phco1g01641 . . . . . . . . . . . . . . . . . .
Pvu10g0186 . . . . . Ahy12g0435 Ahy2g0392 . . . . . . . . . . . . . . . . . . Gso3g0602 . . . . . . Lapu10g01461 . . . . . Lja3g4713 . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa4g00240 . . . . . . . . . . . Phco1g01642 . . . . . . . . . . . . . . . . . .
Pvu10g0188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Lan Lan1g0801 Chr1 18691649 18694185 -
Lal Lal14g0217 Chr14 2464277 2468303 -
Pvu Pvu10g0179 Chr10 2752346 2757654 +
Amo Amo12g2054 Chr12 96535965 96539305 -
Amo Amo02g2232 Chr02 73176646 73179870 -
Gso Gso3g0585 Chr3 16223243 16228110 +
Lal Lal14g0217 Chr14 2464277 2468303 -
Lasa Lasa7g02197 Chr7 502704225 502708138 +
Lja Lja3g3194 Chr3 61630118 61633306 -
Mepo Mepo2g00633 Chr2 7518177 7533399 +
Mtr Mtr4g0588 Chr4 7469191 7471678 +
Pste Pste6g00367 Chr6 1232367 1238394 -
Spst Spst4g02886 Chr4 68576652 68577409 +
Vimu Vimu9g01253 Chr9 20429684 20445574 -
Pvu Pvu10g0180 Chr10 2761552 2763274 +
Aed Aed2g1425 Chr2 16160491 16161999 +
Lan Lan1g0801 Chr1 18691649 18694185 -
Lapu Lapu10g01458 Chr10 23360328 23361818 +
Lja Lja3g4717 Chr3 89275683 89277231 +
Pvu Pvu10g0181 Chr10 2778387 2780941 +
Cca Cca01g02427 Chr01 53320985 53333569 +
Phco Phco1g01639 Chr1 54288449 54293641 +
Vian Vian1g02524 Chr1 35707123 35745003 +
Vimu Vimu9g01252 Chr9 20413263 20415836 -
Viun Viun3g02914 Chr3 35227694 35237599 -
Vra Vra9g0951 Chr9 11370415 11375898 -
Pvu Pvu10g0182 Chr10 2781686 2783047 -
Amo Amo12g2053 Chr12 96518230 96524147 +
Amo Amo02g2230 Chr02 73160894 73166163 +
Cca Cca01g01711 Chr01 39835937 39841921 -
Gma Gma03g00592 Chr03 17624734 17631300 -
Gso Gso3g0586 Chr3 16232414 16238949 -
Lasa Lasa7g00525 Chr7 19907735 19912019 +
Lja Lja3g3193 Chr3 61622986 61629207 +
Mepo Mepo2g00634 Chr2 7538831 7544783 -
Mesa Mesa13g04838 Chr13 76702809 76708178 +
Mtr Mtr4g0589 Chr4 7478034 7483599 -
Psa Psa7g5444 Chr7 468644530 468649883 -
Pumo Pumo7g01323 Chr7 32681909 32688479 -
Spst Spst4g01484 Chr4 53456521 53461967 -
Ssu Ssu4g2211 Chr4 51653063 51659039 -
Tpr Tpr4g0869 Chr4 8221528 8226360 -
Trre Trre7g00612 Chr7 3896988 3901005 -
Tsu Tsu06g00559 Chr06 4786955 4791101 -
Viun Viun10g00742 Chr10 7605761 7611554 +
Pvu Pvu10g0183 Chr10 2784028 2788300 -
Phco Phco1g01640 Chr1 54298172 54304733 -
Pste Pste6g00364 Chr6 1223033 1230438 +
Pvu Pvu10g0184 Chr10 2793685 2794466 -
Aed Aed2g1428 Chr2 16224060 16225764 +
Ahy Ahy12g0437 Chr12 6747693 6749260 -
Ahy Ahy2g0394 Chr2 5335900 5337179 -
Gma Gma03g00611 Chr03 18768271 18770192 +
Gso Gso3g0600 Chr3 17269773 17271837 +
Lan Lan1g0800 Chr1 18686369 18688432 -
Lapu Lapu10g01459 Chr10 23360328 23361818 +
Lja Lja3g4716 Chr3 89205665 89207215 +
Pvu Pvu10g0185 Chr10 2794751 2795328 -
Ahy Ahy12g0436 Chr12 6738985 6745063 -
Ahy Ahy2g0393 Chr2 5324811 5326396 -
Gso Gso3g0601 Chr3 17317285 17319284 +
Lapu Lapu10g01460 Chr10 23451962 23453452 -
Lja Lja3g4715 Chr3 89197532 89199083 +
Phco Phco1g01641 Chr1 54308442 54310181 -
Pvu Pvu10g0186 Chr10 2802981 2804553 -
Ahy Ahy12g0435 Chr12 6721754 6723339 -
Ahy Ahy2g0392 Chr2 5313960 5315545 -
Gso Gso3g0602 Chr3 17326967 17328889 +
Lapu Lapu10g01461 Chr10 23458327 23459817 +
Lja Lja3g4713 Chr3 89182853 89186148 -
Pvu Pvu10g0187 Chr10 2807023 2808555 -
Lasa Lasa4g00240 Chr4 8760427 8762532 -
Phco Phco1g01642 Chr1 54316066 54319982 -
Pvu Pvu10g0188 Chr10 2810253 2810659 -
Lasa Lasa4g00240 Chr4 8760427 8762532 -