Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01711 ATGTTGACCAAGTTTGGAAGATGGGTCTCTTTGGTTCCCAAGAGGGGATTTTCCACCTCCACCAGCTTTCAAAAGGGTGCTTCTGAGGAAGGAGTGAAATCAATGAACCTGTGTTCTGCAATCAATCAGGCTCTCCACATTGCCTTGGACACTGATCCACGTTCTTACGTTTTTGGAGAGGATGTAAGCTTTGGTGGGGTTTTCCGTTGCACAAATGGATTAGCAGACCAATTTGGTAAAAAGAGGGTTTTCAATACTCCTCTCTGTGAGCAGGGTATCGTTGGTTTTGGCATTGGTCTAGCAGCTATGGGAAATCAAGCCATAGCAGAAATCCAGTTTGCAGATTACATTTTCCCTGCCTTCGATCAGGCAATAACTGACCAATTTTGTTTCCAGATTGTCAATGAAGCTGCTAAATTCAGATACCGGAGTGGGAACCAATTTAATTGTGGTGGTTTAACAATTAGAACCCCTTATGGAGCTGTGGGCCATGGTGGGCATTATCACTCTCAGTCCCCTGAGGCTTTCTTCTGTCATGTTCCTGGTATCAAAGTGGTCATCCCTCGAAGTCCAAGACAAGCAAAAGGGTTATTACTATCTTGCATCCGAGATCCAAATCCTATAGTATTTTTTGAACCAAAGTGGCTTTATCGTTTGGCTGTTGAAGAAGTACCGGAGGATGATTACATGTTGCCTTTATCTGAGGCTGAGGTGATTCGGCAAGGAAGTGATATAACACTTGTTGGATGGGGAGCTCAATTATCTACAATGGAACAAGCTTGTCTTGATGCTGAAAAAGAGGGAATTTCTTGTGAACTGATTGATCTGAAGACACTAATTCCTTGGGATAAGGAGACAGTAGAGGCCTCAGTTAAGAAGACAGGAAGATTGCTTGTTAGTCATGAAGCTCCTATAACTGGAGGTTTTGGTGCTGAAATTTCAGCTTCCATTGTTGAACGCTGCTTCTCAAGGTTAGAGGCACCTGTGGCAAGAGTTTGTGGTCTGGACACTCCTTTTCCTTTGGTTTTTGAACCTTTCTACATGCCAACCAAAAACAAGATATTGGATGCAATTAAATCAACTGTGAACTACTAA 1095 0.4292 MLTKFGRWVSLVPKRGFSTSTSFQKGASEEGVKSMNLCSAINQALHIALDTDPRSYVFGEDVSFGGVFRCTNGLADQFGKKRVFNTPLCEQGIVGFGIGLAAMGNQAIAEIQFADYIFPAFDQAITDQFCFQIVNEAAKFRYRSGNQFNCGGLTIRTPYGAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPRQAKGLLLSCIRDPNPIVFFEPKWLYRLAVEEVPEDDYMLPLSEAEVIRQGSDITLVGWGAQLSTMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVKKTGRLLVSHEAPITGGFGAEISASIVERCFSRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAIKSTVNY 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01711 364 Gene3D - 32 232 - -
Cca01g01711 364 Pfam Transketolase, pyrimidine binding domain 35 218 IPR005475 -
Cca01g01711 364 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED 15 364 - -
Cca01g01711 364 CDD TPP_PYR_E1-PDHc-beta_like 40 214 - -
Cca01g01711 364 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 34 244 IPR029061 -
Cca01g01711 364 Pfam Transketolase, C-terminal domain 235 354 IPR033248 -
Cca01g01711 364 Gene3D - 233 363 IPR009014 GO:0003824
Cca01g01711 364 SUPERFAMILY TK C-terminal domain-like 228 364 IPR009014 GO:0003824
Cca01g01711 364 SMART Transket_pyr_3 35 219 IPR005475 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01711 Cca-Chr1 39835937 39841921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01711 14 364 Acyl Lipid Metabolism Gene Families AT1G55510 84.900 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01711 K00167 - gmx:100802853 679.863