Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0586 ATGTCAACCAAGTTTGGAAGATTGGTGCCTTTGGTTTTTTCCAAGAGGGGATTTTCCACCTCCACCAGCGTTCAAAAGGGTGGTGGTGGTTCTGAGGAAGGTTTGAAATCATTGAACCTCTGTTCTGCAATTAATCAGGCTCTTCACATTGCCTTGGACTCTGATCCACGTTCTTATGTTTTTGGAGAGGATGTAAGCTTTGGTGGGGTCTTCCGTTGCACAACTGGATTAGCAGACCAATTTGGTAAAAAGAGGGTTTTCAATACTCCACTCTGTGAGCAGGGTATCGTCGGTTTTGGCATTGGTCTCGCAGCTATGGGAAATCGAGCCATAGCAGAAATCCAGTTTGCAGATTACATTTTCCCTGCTTTTGACCAGATTGTCAATGAAGCTGCTAAATTTAGATACCGAAGTGGGAACCAATTTAATTGTGGCGGTTTAACAGTTAGAGCCCCTTATGGAGCTGTGGGCCATGGTGGGCATTACCACTCTCAGTCTCCTGAGGCTTTCTTCTGTCATGTTCCTGGTATCAAAGTGGTCATCCCTCGAAGTCCACGACAAGCAAAAGGGTTATTGCTATCTTGCATACGAGATCCAAATCCTGTAGTATTTTTTGAACCGAAGTGGCTTTATCGTTTGGCTGTTGAAGAAGTACCAGAGGATGACTACATGCTGCCTTTATCTGAGGCCGAGGTAATTCGGCAAGGAAGTGATGTAACACTTGTTGGATGGGGAGCTCAATTAGCTATAATGGAACAAGCTTGTCTTGATGCTGAAAAAGAGGGAATTTCTTGTGAATTGATTGATCTGAAGACACTAATTCCTTGGGATAAGGAAACAGTAGAGTCCTCAGTTAACAAGACAGGAAGATTGCTTGTTAGTCATGAAGCTCCTATAACTGGAGGTTTTGGTGCTGAAATTTCAGCTTCTATTGTTGAGCGTTGCTTCTCAAGGTTAGAGGCCCCTGTAGCAAGAATTTGTGGTCTGGACACTCCTTTTCCTTTGGTTTTTGAACCTTTCTACATGCCAACCAAAAATAAGATATTGGATGCAATTAAATCAACTGTGAAGTACTAG 1077 0.4318 MSTKFGRLVPLVFSKRGFSTSTSVQKGGGGSEEGLKSLNLCSAINQALHIALDSDPRSYVFGEDVSFGGVFRCTTGLADQFGKKRVFNTPLCEQGIVGFGIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLAVEEVPEDDYMLPLSEAEVIRQGSDVTLVGWGAQLAIMEQACLDAEKEGISCELIDLKTLIPWDKETVESSVNKTGRLLVSHEAPITGGFGAEISASIVERCFSRLEAPVARICGLDTPFPLVFEPFYMPTKNKILDAIKSTVKY* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0586 358 Pfam Transketolase, pyrimidine binding domain 39 212 IPR005475 -
Gso3g0586 358 Gene3D - 35 226 - -
Gso3g0586 358 SMART Transket_pyr_3 38 213 IPR005475 -
Gso3g0586 358 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 35 220 IPR029061 -
Gso3g0586 358 Gene3D - 227 357 IPR009014 GO:0003824
Gso3g0586 358 CDD TPP_PYR_E1-PDHc-beta_like 43 208 - -
Gso3g0586 358 Pfam Transketolase, C-terminal domain 229 348 IPR033248 -
Gso3g0586 358 SUPERFAMILY TK C-terminal domain-like 222 358 IPR009014 GO:0003824
Gso3g0586 358 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED 11 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0586 Gso-Chr3 16232414 16238949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0586 31 358 Acyl Lipid Metabolism Gene Families AT1G55510 89.634 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0586 K00167 - gmx:100780597 718.768