Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01640 ATGTCAACCAAGTTTGGAAGATTGGTCTCTTTTGTTGGCAAGAGAAGATTTTCCACCTCGTCCAGTGTTCAAAAGGGTGGTTCTGAGCAAGGTGTGAAATCATTGAACCTCTGTTCTGCTATTAATCAGGCTCTGCACATTGCCTTGGACTCTGATCCCCGTTCTTATGTGTTTGGAGAGGATGTAAGCTTTGGTGGTGTCTTCCGTTGCACAACTGGATTAGCAGACCAATTTGGGAAAAAGAGGGTTTTCAATACTCCTCTCTGTGAGCAGGGCATTGTTGGCTTTGGCATTGGTCTAGCAGCTATGGGAAATCGAGCCATAGCAGAAATCCAGTTTGCAGATTACATTTTCCCTGCTTTTGACCAGATTGTCAATGAAGCTGCTAAATTCAGATACCGGAGTGGGAACCAATTTAATTGCGGTGGTTTAACAATTAGAACCCCTTATGGAGCTGTGGGCCATGGTGGGCATTATCACTCTCAGTCCCCTGAGGCTTTCTTCTGTCATGTCCCTGGTATCAAAGTGGTCATTCCCAGAAGTCCACGACAAGCAAAAGGGTTGTTGCTATCTTGCATTCGAGATCCAAATCCTATAGTATTTTTTGAACCGAAGTGGCTTTATCGTTTGGCTGTAGAAGAAGTACCGGAGGATGATTACATGCTTCCTTTATCTGAGGCTGAGGTAATTCGGCAAGGAAGCGATATAACACTTGTCGGATGGGGAGCTCAATTATCTATAATGGAACAAGCTTGTCTTGATGCTGAAAAAGAGGGAATTTCTTGTGAATTGATTGATCTGAAGACACTAATTCCTTGGGATAAGGAAACAGTAGAAGCCTCAGTTAATAAGACAGGAAGATTGCTCGTTAGTCATGAGGCTCCTATAACTGGAGGTTTTGGTGCTGAAGTCTCAGCTTCCATCGTTGAGCGTTGCTTCTCAAGGTTAGAGGCCCCTGTAGCAAGAATTTGTGGTCTGGATACTCCTTTTCCTTTGGTTTTTGAGCCTTTCTACGTGCCAACAAAAAATAAGATATTGGATGCAATAAAATCAACTGTGAAGTACTAA 1068 0.4326 MSTKFGRLVSFVGKRRFSTSSSVQKGGSEQGVKSLNLCSAINQALHIALDSDPRSYVFGEDVSFGGVFRCTTGLADQFGKKRVFNTPLCEQGIVGFGIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRTPYGAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPRQAKGLLLSCIRDPNPIVFFEPKWLYRLAVEEVPEDDYMLPLSEAEVIRQGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVNKTGRLLVSHEAPITGGFGAEVSASIVERCFSRLEAPVARICGLDTPFPLVFEPFYVPTKNKILDAIKSTVKY 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01640 355 SMART Transket_pyr_3 35 210 IPR005475 -
Phco1g01640 355 Pfam Transketolase, C-terminal domain 226 345 IPR033248 -
Phco1g01640 355 FunFam 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial 224 355 - -
Phco1g01640 355 FunFam Pyruvate dehydrogenase E1 beta subunit 32 223 - -
Phco1g01640 355 CDD TPP_PYR_E1-PDHc-beta_like 40 205 - -
Phco1g01640 355 Gene3D - 224 354 IPR009014 GO:0003824
Phco1g01640 355 Pfam Transketolase, pyrimidine binding domain 36 209 IPR005475 -
Phco1g01640 355 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED 27 355 - -
Phco1g01640 355 Gene3D - 32 223 - -
Phco1g01640 355 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 34 235 IPR029061 -
Phco1g01640 355 SUPERFAMILY TK C-terminal domain-like 219 355 IPR009014 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01640 Phco-Chr1 54298172 54304733 Dispersed