Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01639 ATGGTGCTCTACTTGGATCGTGTGTCAAAAGGTCTAGAGCTAGGGTTCTACTTGGACCGTGTGTTGAGGTTGAGTCTTGGCGTCTCGCTGCAGAAACACTCAACACAACACCAAAACATAATCAAACCTATGGATTCCTTCTCTCGGCTCAGCATCTTTTGTCTCTTAATTTCACTCTTTCCTCTTTTCTCTTCCTCTGCCTTGCTGTTTCAGGGGTTCAACTGGGAATCAAGTAAGAAAGGGGGTTGGTACAACTCGCTGAAGAACTCTATTCCTGACATTGCAAATGCAGGAATTACTCATGTGTGGCTCCCTCCTCCCTCTCAATCTGTTTCTCCTGAAGGGTATCTTCCAGGAAGGCTATATGATCTTGATGCATCAAGGTACGGATCCAAGAATGAACTGAAGTCACTAATTGCTGCCTTTCATGAGAAGGGGATCAAGTGCCTGGCTGACATAGTGATCAACCACAGAACTGCAGAGAGGAAGGATGGAAGAGGAATATATTGTATCTTTGAAGGTGGTACTCCAGATGCACGCCTTGATTGGGGTCCATCTTTCATTTGCAAAGATGACACTACTTATTCTGATGGCACTGGAAACAATGACAGTGGAGAGCGCTATGATGCTGCACCTGACATTGACCATCTCAATCCTCAGGTGCAAAGAGAGTTGTCTGAATGGATGAATTGGCTCAAAAGTGAGGTTGGTTTTGATGGATGGAGGTTTGATTTTGTGAAGGGCTATGCCCCTAGCATTTCCAAGATCTATATGGAACAAACTAGGCCAGATTTTGCAGTAGGAGAGAAATGGGATCCTCTCTCATACCAGGATGGGAAGCTTAACTATAACCAAGATAGCCATCGTGGGGCACTGGTGAATTGGGTTGAATCTGCAGGTGGGGCTATTACAGCCTTTGATTTCACAACCAAAGGAATTCTTCAAGCTGCTGTGCAAGGGGAGCTGTGGAGGTTGATAGATCCAAATGGCAAGCCTTCTGGAATGATTGGTGTGAAACCAGAAAATGCAGTAACCTTTATTGACAACCATGACACTGGTTCCACACAGAGACTTTGGCCATTCCCTTCTGACAAAGTCATGCAAGGATATGCCTACATTCTAACACACCCTGGGACCCCCTCAATATTCTACGACCACTTCTTTGATTGGGGCTTGAAGGAGCAGATTGCCAAATTGAGTAGCATAAGGGTGAGGAATGGGATCAATGAGAAAAGCACTGTGAAAATTTTGGCTGCTGAAGGTGACCTTTATGTTGCAAAGATAGACAACAAGATCATGGTGAAGATAGGGCCAAAGATGGACCTTGGAGATCTTATTCCCTCAAATTTCCATGTTGCTACCTCTGGCCAAGACTATGCCGTGTGGGAGTGA 1392 0.4519 MVLYLDRVSKGLELGFYLDRVLRLSLGVSLQKHSTQHQNIIKPMDSFSRLSIFCLLISLFPLFSSSALLFQGFNWESSKKGGWYNSLKNSIPDIANAGITHVWLPPPSQSVSPEGYLPGRLYDLDASRYGSKNELKSLIAAFHEKGIKCLADIVINHRTAERKDGRGIYCIFEGGTPDARLDWGPSFICKDDTTYSDGTGNNDSGERYDAAPDIDHLNPQVQRELSEWMNWLKSEVGFDGWRFDFVKGYAPSISKIYMEQTRPDFAVGEKWDPLSYQDGKLNYNQDSHRGALVNWVESAGGAITAFDFTTKGILQAAVQGELWRLIDPNGKPSGMIGVKPENAVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGTPSIFYDHFFDWGLKEQIAKLSSIRVRNGINEKSTVKILAAEGDLYVAKIDNKIMVKIGPKMDLGDLIPSNFHVATSGQDYAVWE 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01639 463 PANTHER ALPHA-AMYLASE 47 463 - -
Phco1g01639 463 Pfam Alpha amylase, catalytic domain 94 250 IPR006047 GO:0005975
Phco1g01639 463 SUPERFAMILY (Trans)glycosidases 69 399 IPR017853 -
Phco1g01639 463 PIRSF Alpha-amylase_plant 44 463 IPR013775 GO:0004556|GO:0005509|GO:0005975
Phco1g01639 463 SMART alpha-amyl_c2 404 463 IPR012850 GO:0004556|GO:0005509|GO:0005975
Phco1g01639 463 Gene3D - 408 463 IPR013780 -
Phco1g01639 463 SUPERFAMILY Glycosyl hydrolase domain 408 463 - -
Phco1g01639 463 PRINTS Alpha-amylase signature 341 353 IPR006046 GO:0004556|GO:0005975|GO:0043169
Phco1g01639 463 PRINTS Alpha-amylase signature 238 249 IPR006046 GO:0004556|GO:0005975|GO:0043169
Phco1g01639 463 PRINTS Alpha-amylase signature 146 157 IPR006046 GO:0004556|GO:0005975|GO:0043169
Phco1g01639 463 SMART aamy 67 403 IPR006047 GO:0005975
Phco1g01639 463 CDD AmyAc_arch_bac_plant_AmyA 69 414 - -
Phco1g01639 463 Gene3D Glycosidases 68 407 - -
Phco1g01639 463 Pfam Alpha-amylase C-terminal beta-sheet domain 405 463 IPR012850 GO:0004556|GO:0005509|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01639 Phco-Chr1 54288449 54293641 Transposed