Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00364 GAACAGAACAAGGTACGATCATTTCGTGTTCTAGGCATTGAAAAGACAAGATTTTTATTAAATTCAAGTTCAAATCCGTTTTGGGGTGCTATTGTTTCAGCAAGTTTGTCACATAGTCGATTAACATGAACAACAAGTTTGGAAGATTGGTGTCTTTGGTTTCTAAGAGGGGATTTTCCACCTCCACCTGCGTTCAAAAGGGTGGTTCTGAGGAAGGTTTGAAATCATTGAACCTCTGTTCTGCAATTAATCAGGCTCTCCACATTGCCTTGGACACTGATCCCCGTTCCTATGTTTTTGGAGAGGATGTAAGTTTTGGCGGGGTATTTCGTTGCACAACTGGATTAGTAGACCAATTTGGTAAAAAGAGGGTCTTCAATACTCCTCTCTGTGAGCAGGGTATTGTCGGTTTTGGCATTGGACTAGCTGCTATGATTGTCAATGAAGCTGCTAAATTCAGATACCGGAGTGGAAACCAATTTAATTGTGGTGGTTTAACAATTAGAGCCCCTTATGGAGCTGTGGGCCATGGAGGGCATTACCACTCTCAGTCCCCTGAGGCTTTCTTCTGTCATGTTCCTGGTATCAAAGTGGTCATCCCTCGAAGTCCACGAGAAGCAAAAGGGTTATTGCTATCTTGCATACGAGATCCGAATCCTATTGTATTTTTTGAACCAAAGTGGCTTTATCGTTTGGCTGTTGAAGAAGTACCTGAGGATGATTACATGGTACCTTTATCTGAAGCTGAGGTAATTAGACAAGGAAGTGATATAACACTTGTTGGATGGGGAGCTCAACTATCTATAATGGAACAAGCTTGTCTTGATGCTGAAAAAGAGGGAATTTCTTGTGAATTGATTGATTTGAAGACACTAATTCCTTGGGATAAGGAAACAGTAGAGGCTTCAGTTAATAAGACAGGAAAATTGCTTGTTAGCCATGAAGCTCCTATAACTGGAGGTTTTGGTGCTGAAATCTCAGCTTCCATTGTTGAGCGTTGCTTCTCAAGGTTAGAGGCCCCTGTAACAAGAATTTGTGGTCTGGACACTCCTTTTCCTTTGGTTTTTGAACCTTTCTACATGCCAACCAAAAACAAGATATTGGATGCAATTAAATCAACTGTGAACTACTAATCAGCATAGTCTTTATTTTTTGGCAATCATCAATACAGTCTTGATGCCATTGGGTGATGCATGTGTATATTGCACCATGGAGTTAGGACTTAGGAGGCTATCCAAAAATTAAATTTAACAAGATAAACAAAAGGGCATGTGCATGTAATACTGCTTTTATGATGCCCTTTGTACTGACAAACGTCAAATATTTGAAGGGGGTGATCCCATTAGTAAATTTCAAATAATAAATTGTAGTTTCTCTTTTAATTGTGAAGTTTTTTTTTTATCATCAACAAATGTTAGTTATTAGTATTTTGTTAGAATGTTAAGAGGAAATATTAGAACATGTGACATCTTCCTCTCCCTTTTTCCCTTCAACCACTAATTGTGAAGTTAA 1512 0.3882 MNNKFGRLVSLVSKRGFSTSTCVQKGGSEEGLKSLNLCSAINQALHIALDTDPRSYVFGEDVSFGGVFRCTTGLVDQFGKKRVFNTPLCEQGIVGFGIGLAAMIVNEAAKFRYRSGNQFNCGGLTIRAPYGAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPREAKGLLLSCIRDPNPIVFFEPKWLYRLAVEEVPEDDYMVPLSEAEVIRQGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVNKTGKLLVSHEAPITGGFGAEISASIVERCFSRLEAPVTRICGLDTPFPLVFEPFYMPTKNKILDAIKSTVNY 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00364 335 Pfam Transketolase, pyrimidine binding domain 102 189 IPR005475 -
Pste6g00364 335 Gene3D - 204 334 IPR009014 GO:0003824
Pste6g00364 335 SMART Transket_pyr_3 35 190 IPR005475 -
Pste6g00364 335 Pfam Transketolase, C-terminal domain 206 325 IPR033248 -
Pste6g00364 335 CDD TPP_PYR_E1-PDHc-beta_like 40 185 - -
Pste6g00364 335 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED 104 335 - -
Pste6g00364 335 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 34 215 IPR029061 -
Pste6g00364 335 Gene3D - 32 102 - -
Pste6g00364 335 Gene3D - 103 203 - -
Pste6g00364 335 FunFam 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial 204 335 - -
Pste6g00364 335 SUPERFAMILY TK C-terminal domain-like 199 335 IPR009014 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00364 Pste-Chr6 1223033 1230438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00364 28 335 Acyl Lipid Metabolism Gene Families AT1G55510 85.061 0.0 579