Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01252 ATGGATTCTTTCTCTCGGCTCAGCATTTTTTGTCTCTTCATTTCACTCCTTCCTCTTTTCTCTTCCCCTGCCTTGCTGTTTCAGGGGTTCAACTGGGAATCAAGTAAGAAAGGGGGGTGGTACAACTCTCTTAAGAACTCTATTCCTGACCTTGCAAATGCAGGAATCACTCATGTGTGGCTCCCTCCTCCCTCTCAATCTGTTTCTCCTGAAGGATATCTTCCAGGAAGGCTATATGATCTTGATGCATCAAAATATGGATCCAAGAATGAACTGAAGTCCCTGATTGCTGCTTTTCATGAGAAGGGTATAAAGTGCCTAGCTGACATAGTGATCAACCACAGAACTGCAGAGAGGAAGGATGGGAGAGGAATATATTGTATCTTTGAAGGTGGTACTCCAGATTCACGCCTTGATTGGGGTCCATCTTTCATTTGCAGAGATGACACTGCATATTCTGATGGCACTGGAAACAATGACAGTGGAGAGGGATATGATGCTGCACCTGACATTGATCATCTCAATCCACAGGTGCAAAGAGAGTTGTCAGAATGGATGAACTGGCTCAAAACTGAGATTGGTTTTGATGGATGGAGGTTTGATTTTGTGAAGGGCTATGCCCCTAGCATCTCCAAGATCTATATGGAACAGACTAAGCCAGATTTTGCAGTAGGTGAGAAATGGGATTCTATCTCATATGGGCAGGATGGGAAGCCAAACTATAACCAAGATAGTCATCGTGGGGCACTGGTGAATTGGGTTGAATCTGCAGGTGGAGCTATTACTGCATTTGATTTCACAACAAAAGGAATTCTTCAGGCTGCTGTGCAAGGAGAATTGTGGAGGTTGATAGATCCAAATGGCAAGCCTCCTGGAATGATTGGTGTGAAACCAGAAAATGCAGTAACTTTCATTGATAACCATGACACTGGTTCCACACAGAGACTTTGGCCATTCCCTTCTGACAAAGTCATGCAAGGATATGCCTACATTCTAACACACCCTGGCACCCCCTCAATATTCTACGACCACTTCTTTGATTGGGGCTTGAAGGAGCAGATTGCAAAATTGAGTAGCATAAGGTTGAGGAATGGGATCAATGAGAAAAGCACTGTTAAAATTATGGCATCTGAAGGTGACCTTTATGTTGCAAAGATAGACAACAAGATCATGGTGAAGATAGGGCCAAAGATGGACCTTGGAAATCTTATTCCCTCAAATCTCCATGTTGCTACGTCTGGCCAAGACTATGCCGTGTGGGAGTGA 1266 0.44 MDSFSRLSIFCLFISLLPLFSSPALLFQGFNWESSKKGGWYNSLKNSIPDLANAGITHVWLPPPSQSVSPEGYLPGRLYDLDASKYGSKNELKSLIAAFHEKGIKCLADIVINHRTAERKDGRGIYCIFEGGTPDSRLDWGPSFICRDDTAYSDGTGNNDSGEGYDAAPDIDHLNPQVQRELSEWMNWLKTEIGFDGWRFDFVKGYAPSISKIYMEQTKPDFAVGEKWDSISYGQDGKPNYNQDSHRGALVNWVESAGGAITAFDFTTKGILQAAVQGELWRLIDPNGKPPGMIGVKPENAVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGTPSIFYDHFFDWGLKEQIAKLSSIRLRNGINEKSTVKIMASEGDLYVAKIDNKIMVKIGPKMDLGNLIPSNLHVATSGQDYAVWE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01252 421 PIRSF Alpha-amylase_plant 1 421 IPR013775 GO:0004556|GO:0005509|GO:0005975
Vimu9g01252 421 Pfam Alpha-amylase C-terminal beta-sheet domain 363 421 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vimu9g01252 421 SUPERFAMILY (Trans)glycosidases 25 359 IPR017853 -
Vimu9g01252 421 Gene3D Glycosidases 25 365 - -
Vimu9g01252 421 CDD AmyAc_arch_bac_plant_AmyA 26 372 - -
Vimu9g01252 421 PANTHER ALPHA-AMYLASE 26 421 - -
Vimu9g01252 421 SMART alpha-amyl_c2 362 421 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vimu9g01252 421 SUPERFAMILY Glycosyl hydrolase domain 366 421 - -
Vimu9g01252 421 Gene3D - 366 421 IPR013780 -
Vimu9g01252 421 SMART aamy 24 361 IPR006047 GO:0005975
Vimu9g01252 421 Pfam Alpha amylase, catalytic domain 51 208 IPR006047 GO:0005975
Vimu9g01252 421 PRINTS Alpha-amylase signature 299 311 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vimu9g01252 421 PRINTS Alpha-amylase signature 103 114 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vimu9g01252 421 PRINTS Alpha-amylase signature 195 206 IPR006046 GO:0004556|GO:0005975|GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01252 Vimu-Chr9 20413263 20415836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01252 12 421 Glycoside Hydrolase AT4G25000 68.281 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01252 K01176 - gmx:100815664 761.525