Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0188 ATGCAGAGACTAATCAGTTGGGTTTTGATTCTTTGCTTTGTTTCACCATGTTTTTGTGAGAGGTTGATGGGATCTGCAAACACATACAATGTGATTGACTATGGTGCTCATGGTGATGGTAAAACTGATGATTCCCAGGCATTTTTAAGTGCATGGCAAAAGACATGCTCAACAAAAGGGGCATCAACTCTAGTTATACCATCAAAAGGAGTATTCTTATTGAAGAAGAACATAATCCTCAAAGGTCCTTGTCAAGCCACAAACATTAAAATTCAG 276 0.3804 MQRLISWVLILCFVSPCFCERLMGSANTYNVIDYGAHGDGKTDDSQAFLSAWQKTCSTKGASTLVIPSKGVFLLKKNIILKGPCQATNIKIQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0188 92 Pfam Pectate lyase superfamily protein 30 83 IPR024535 -
Pvu10g0188 92 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 92 - -
Pvu10g0188 92 Gene3D - 20 92 IPR012334 -
Pvu10g0188 92 PANTHER - 1 92 - -
Pvu10g0188 92 SUPERFAMILY Pectin lyase-like 9 83 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0188 Pvu-Chr10 2810253 2810659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0188 18 86 Glycoside Hydrolase AT2G41850 47.826 1.47e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0188 K01184 - pvu:PHAVU_010G0180000 192.586