Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0189 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01645 . . . . . . . . . . . . . . . . . .
Pvu10g0190 . . . Aed2g1468 . . . . . . . Apr10g0392 . . . . . Cca01g01275 . . . . . Gma16g00842 Gso16g0749 . . . . . . . Lapu10g01038 . . . . . Lja3g4448 . . . . . . Phco1g01646 . . Pste6g00292 . . Seca4g10514 Spst4g01485 Ssu2g0540 . . . . . . . Viun10g00738 . .
Pvu10g0191 . . Adu02g01632 Aed2g1469 Aev02g1597 Ahy12g1668 Ahy2g1433 Aip02g01879 . . . Apr10g0391 . . . Bva02g01258 . Cca01g01274 . Dod07g1267 . . . Gma16g00841 Gso16g0748 . . . . . . . . . . . . . Lja3g4447 . . . . Mtr8g0403 . . . . . . . . . Ssu2g0541 . . . . . . . . . Vra9g1062
Pvu10g0192 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste6g00534 . . . . . . . . . . . . . . .
Pvu10g0193 . . . Aed2g1470 Aev02g1595 . . . . . . Apr10g0390 . . . . . Cca01g01273 . Dod07g1266 . . . Gma16g00840 Gso16g0747 . . . . . . . Lapu10g01036 . . . . . Lja3g4446 . . . . . . Phco1g01648 . . Pste6g00297 . . Seca4g10510 Spst4g01487 Ssu2g0542 . . . . Vian9g01236 . Vimu9g01318 Viun10g00735 . Vra9g1063
Pvu10g0194 . . Adu02g01630 Aed2g1472 Aev02g1594 Ahy12g1667 Ahy2g1431 Aip02g01877 . . Amo02g2033 Apr10g0389 Arst2g02113 Bach6g01162 . Bva02g01257 . . . Dod07g1265 . . Gma03g00729 . . . Lal14g0053 . . Lan12g0022 . . Lapu10g01035 . . . . . Lja3g4445 . . . . . . Phco1g01649 . . Pste6g00307 . . . Spst4g01488 Ssu2g0543 . . . . . . Vimu9g01319 . . Vra9g1065
Pvu10g0195 . . Adu02g01629 Aed2g1474 Aev02g1592 Ahy12g1665 Ahy2g1429 Aip02g02204 . . . Apr10g0388 Arst2g02112 . . . . Cca01g01272 . Dod07g1264 . . . . . Gso3g0716 Lal14g0054 . . Lan12g0023 . . Lapu10g01034 . . . . . Lja3g4444 . . . . . . Phco1g01650 . . Pste6g00320 Pumo7g01113 . Seca4g10508 Spst4g01489 Ssu2g0544 . . . . Vian9g01238 . Vimu9g01320 Viun10g00731 . Vra9g1066
Pvu10g0196 . . . . Aev02g1591 . . . . . . Apr10g0387 . Bach6g01187 . Bva02g01244 . Cca01g01270 . Dod07g1263 . . . . . . . . . . . . . . . . . . Lja3g4442 . . . . . . Phco1g01651 . . Pste6g00324 . . . Spst4g01490 Ssu2g0546 . . . . Vian9g01240 . Vimu9g01321 Viun10g00726 . Vra9g1068
Pvu10g0197 . . Adu02g01623 Aed2g1475 Aev02g1590 Ahy12g1657 Ahy2g1422 Aip02g01866 . . Amo02g2025 Apr10g0386 . . . . . Cca01g01267 . . . . . . . . . . Lal19g0080 . Lan1g0886 . . . . . . . Lja3g4437 . . . . . . . . Psa4g4682 . . . . . Ssu2g0548 . . . Tsu08g00343 . . . . . Vra9g1070
Pvu10g0198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst4g01492 . . . . . . . Vimu9g01323 . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0189 Chr10 2816208 2817733 -
Phco Phco1g01645 Chr1 54348045 54349089 -
Pvu Pvu10g0190 Chr10 2822209 2825609 -
Aed Aed2g1468 Chr2 17233833 17238999 -
Apr Apr10g0392 Chr10 9689940 9692706 +
Cca Cca01g01275 Chr01 22813518 22817800 +
Gma Gma16g00842 Chr16 15062591 15066211 +
Gso Gso16g0749 Chr16 14608368 14612349 +
Lapu Lapu10g01038 Chr10 12198000 12203704 +
Lja Lja3g4448 Chr3 86012830 86015441 +
Phco Phco1g01646 Chr1 54355606 54359057 -
Pste Pste6g00292 Chr6 970064 971826 -
Seca Seca4g10514 Chr4 241042328 241044628 +
Spst Spst4g01485 Chr4 53463752 53467337 -
Ssu Ssu2g0540 Chr2 31596722 31599380 -
Viun Viun10g00738 Chr10 7581357 7586874 +
Pvu Pvu10g0191 Chr10 2832211 2839756 +
Adu Adu02g01632 Chr02 69168627 69180695 -
Aed Aed2g1469 Chr2 17248778 17259335 +
Aev Aev02g1597 Chr02 17616341 17625222 -
Ahy Ahy12g1668 Chr12 90645000 90657312 -
Ahy Ahy2g1433 Chr2 75746040 75758311 -
Aip Aip02g01879 Chr02 81981989 81995445 -
Apr Apr10g0391 Chr10 9678657 9687197 -
Bva Bva02g01258 Chr02 16671664 16677376 -
Cca Cca01g01274 Chr01 22742414 22751156 -
Dod Dod07g1267 Chr07 33966295 33970639 -
Gma Gma16g00841 Chr16 15033534 15041036 -
Gso Gso16g0748 Chr16 14579688 14587497 -
Lja Lja3g4447 Chr3 86004413 86010178 -
Mtr Mtr8g0403 Chr8 4576918 4582040 +
Ssu Ssu2g0541 Chr2 31602141 31606891 +
Vra Vra9g1062 Chr9 13484479 13492117 +
Pvu Pvu10g0192 Chr10 2859613 2863448 -
Pste Pste6g00534 Chr6 1987761 1991030 -
Pvu Pvu10g0193 Chr10 2879040 2881713 -
Aed Aed2g1470 Chr2 17260272 17266989 -
Aev Aev02g1595 Chr02 17595287 17596992 +
Apr Apr10g0390 Chr10 9671902 9677729 +
Cca Cca01g01273 Chr01 22734146 22739816 +
Dod Dod07g1266 Chr07 33961556 33964823 +
Gma Gma16g00840 Chr16 14998372 15017389 +
Gso Gso16g0747 Chr16 14549581 14563612 +
Lapu Lapu10g01036 Chr10 12182267 12184880 +
Lja Lja3g4446 Chr3 85999399 86003027 -
Phco Phco1g01648 Chr1 54378590 54380005 -
Pste Pste6g00297 Chr6 994908 1000496 -
Seca Seca4g10510 Chr4 241015273 241019034 +
Spst Spst4g01487 Chr4 53477245 53478565 -
Ssu Ssu2g0542 Chr2 31624661 31626806 -
Vian Vian9g01236 Chr9 26158856 26160269 -
Vimu Vimu9g01318 Chr9 21349143 21350552 -
Viun Viun10g00735 Chr10 7562781 7565383 +
Vra Vra9g1063 Chr9 13495407 13497899 -
Pvu Pvu10g0194 Chr10 2887872 2892174 +
Adu Adu02g01630 Chr02 69070752 69074643 -
Aed Aed2g1472 Chr2 17298891 17303188 +
Aev Aev02g1594 Chr02 17584744 17588687 +
Ahy Ahy12g1667 Chr12 90506216 90510076 -
Ahy Ahy2g1431 Chr2 75627273 75631149 -
Aip Aip02g01877 Chr02 81856782 81860662 -
Amo Amo02g2033 Chr02 66695533 66699377 -
Apr Apr10g0389 Chr10 9654107 9658747 -
Arst Arst2g02113 Chr2 68490146 68494011 -
Bach Bach6g01162 Chr6 9872776 9876005 +
Bva Bva02g01257 Chr02 16665398 16669839 -
Dod Dod07g1265 Chr07 33915299 33919358 -
Gma Gma03g00729 Chr03 24997746 25000700 -
Lal Lal14g0053 Chr14 709375 713536 +
Lan Lan12g0022 Chr12 197412 201549 +
Lapu Lapu10g01035 Chr10 12171806 12175791 +
Lja Lja3g4445 Chr3 85992915 85997477 -
Phco Phco1g01649 Chr1 54389880 54393455 +
Pste Pste6g00307 Chr6 1029792 1038025 +
Spst Spst4g01488 Chr4 53488471 53492181 +
Ssu Ssu2g0543 Chr2 31663133 31666449 +
Vimu Vimu9g01319 Chr9 21357403 21361004 +
Vra Vra9g1065 Chr9 13516667 13521128 +
Pvu Pvu10g0195 Chr10 2896788 2898617 +
Adu Adu02g01629 Chr02 69042441 69043992 -
Aed Aed2g1474 Chr2 17310939 17314442 +
Aev Aev02g1592 Chr02 17568380 17569288 -
Ahy Ahy12g1665 Chr12 90440761 90442440 -
Ahy Ahy2g1429 Chr2 75598691 75600403 -
Aip Aip02g02204 Chr02 92972179 92976443 -
Apr Apr10g0388 Chr10 9630931 9632069 -
Arst Arst2g02112 Chr2 68461765 68463417 -
Cca Cca01g01272 Chr01 22578679 22581287 -
Dod Dod07g1264 Chr07 33893670 33895475 -
Gso Gso3g0716 Chr3 23443359 23446989 -
Lal Lal14g0054 Chr14 713903 722319 +
Lan Lan12g0023 Chr12 202514 214017 +
Lapu Lapu10g01034 Chr10 12165052 12167452 -
Lja Lja3g4444 Chr3 85990547 85991945 -
Phco Phco1g01650 Chr1 54396752 54397534 +
Pste Pste6g00320 Chr6 1069552 1071524 +
Pumo Pumo7g01113 Chr7 22017014 22019197 +
Seca Seca4g10508 Chr4 240996704 240997531 -
Spst Spst4g01489 Chr4 53493572 53494357 +
Ssu Ssu2g0544 Chr2 31731945 31732751 +
Vian Vian9g01238 Chr9 26204117 26204902 +
Vimu Vimu9g01320 Chr9 21364382 21369853 +
Viun Viun10g00731 Chr10 7515724 7517584 -
Vra Vra9g1066 Chr9 13524618 13526523 +
Pvu Pvu10g0196 Chr10 2903842 2928663 -
Aev Aev02g1591 Chr02 17556791 17558878 +
Apr Apr10g0387 Chr10 9588246 9622212 +
Bach Bach6g01187 Chr6 10272957 10289952 -
Bva Bva02g01244 Chr02 16522495 16537135 +
Cca Cca01g01270 Chr01 22529698 22533066 +
Dod Dod07g1263 Chr07 33839666 33862019 +
Lja Lja3g4442 Chr3 85956623 85972023 +
Phco Phco1g01651 Chr1 54415787 54432462 -
Pste Pste6g00324 Chr6 1078035 1098367 -
Spst Spst4g01490 Chr4 53512282 53523480 -
Ssu Ssu2g0546 Chr2 31749751 31776972 -
Vian Vian9g01240 Chr9 26222377 26247884 -
Vimu Vimu9g01321 Chr9 21369947 21397714 -
Viun Viun10g00726 Chr10 7475817 7503319 +
Vra Vra9g1068 Chr9 13552914 13581757 -
Pvu Pvu10g0197 Chr10 2942960 2948437 -
Adu Adu02g01623 Chr02 68964977 68971035 +
Aed Aed2g1475 Chr2 17347322 17349875 -
Aev Aev02g1590 Chr02 17538522 17552381 +
Ahy Ahy12g1657 Chr12 89860879 89867237 +
Ahy Ahy2g1422 Chr2 75508893 75515083 +
Aip Aip02g01866 Chr02 81253164 81258856 +
Amo Amo02g2025 Chr02 66577079 66583412 +
Apr Apr10g0386 Chr10 9561952 9566557 +
Cca Cca01g01267 Chr01 22387934 22398947 +
Lal Lal19g0080 Chr19 618508 624205 -
Lan Lan1g0886 Chr1 19655330 19659593 +
Lja Lja3g4437 Chr3 85870306 85876678 -
Psa Psa4g4682 Chr4 415164861 415169433 -
Ssu Ssu2g0548 Chr2 31838366 31846223 -
Tsu Tsu08g00343 Chr08 3318974 3334020 -
Vra Vra9g1070 Chr9 13592045 13598777 -
Pvu Pvu10g0198 Chr10 2959653 2960843 -
Spst Spst4g01492 Chr4 53565716 53567537 -
Vimu Vimu9g01323 Chr9 21449833 21452176 -