Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02427 ATGAGCATCTGcaccaccaccaccaccaccaccaccTTTTCCTTGGACCCTCTCTTCAGCTTCAACCACTACCGCGGCAGAGAAAGAGAATCTTCCATTCACCGTTCCAAGCCTAAGCTATTCTCTCTTACATCTTCTTCCAACATCAGCCTCTTCAACTCCAACAACAACTATGACTATTATAGCTATGCCTCTTGCAAATCCCACAAGTTTCTCGCTCCAAAGTTTGAGGCTTTTGCCACAAACACTGATACCCTCGAGTCCCTTCAGTCTTCTGATGTCTTGTTCGACCAGACTTTCCCCATCAACCGAACTGAATTGGTGGAGGGAAAGATCTTTGTAAGATTGGATCAGGGGAAGGATTTGGGAAATTGGGAGCTTACAGTGGGTTGCAATCTACCAGGGAAATGGATTCTTCACTGGGGAGTTTCCCGTGTGGATGATGTTGGAAGTGAATGGGATCAACCTCCTCGTGATATGATACCCCCCGGATCTATTCCTATTAAGGACTATGCAATCGACACACCTATGAAGAAATCATTGTCGTCTACTGAAGCAGATACTTTCTATGAAGTCAGGATTGATCTTAAAGCCAACAATGATATTTCAGCTATTAATTTTGTTCTCAAGGATGAGGAAACTGGTGCTTGGTATCAACACAAAGGAAGAGATTTCAAGGTTCCTCTGGTCAGCTATGTTAAGGAGGATGCTAATATAATTGGACCTAAGAAGGGCTTTAGTTTGTGGCCAGGGGCCTTGGGGCAGATATCTAGCATTCTCCTGAAGTCAGATACAACAAATGATAAAAATCAAGAAGACAGCAGTGGATCCAGAAATTTAAAAGTGGAAAATAGTCAATTAGAAGGATTCTATGTAGAACTTCCTATTACCAAGGAAGTTATCGTTGATAACACTATTAGTGTCTCCATTAGGAAGTGCTCTGAGACAGCTAAGAATATTTTATATTTAGAAACAGATATACCTGGAGATATTCTCCTTCACTGGGGAGTTTGTAGAGATGATTTGAAGTGGTGGGAAATTCCACCTGCTCCTCATCCACCAGAAACAAAAGCATTTAAGGACAGAGCTTTAAGAACTAAATTACAGTCAAGAGAGAGTGGAGAGGGAAGTTCAGTACAACTCTCTTTGGGAGAAGAGTTTTCTGGATTTCTTTTTGTTCTTAAGCTAAATGACAGTACTTGGATAAATGACATGGGAGATGACTTTTATATCCCTCTCCCACTTTCTGGTAGCTTAGTTGTTGGCAACATAGAAGATCAATCAGAAGGTGTACAGATGGAAGTGACTGAAGAGGCAGGTCAAGAGGAATCTATCTCTGCATTTACTGATGGTATAATCAATGAAATAAGACATTTGGTGACCGACATTTCCTCCGAGAAGAATCGGAAGACAAAATCCAAAGAAGCACAAGAAAGCATTCTTCAAGAAATTGAAAAACTAGCTGCTGAAGCCTATAGTATCTTCAGAAGCTCAGTTCCAACTTTCTCAGATGAAACTATTGTGGAATCTGAGGCTGCTGTGGAAACCAAGACATTAGTATTGCCTGACTTGCCTCCACAAATATCCTCAGGAACAGGCACAGGGTATGAAATACTATGCCAGGGGTTTAATTGGGAATCTCATAAATCTGGAAGATGGTACATGGAGCTTAAAGAGAAAGCTGCAGAGCTGGCTTCATTTGGCTTTACTGTGATATGGTTACCACCACCTACGGAGTCTGTTTCACCTGAAGGATATATGCCAAAGGATTTATATAATTTAAATTCTAGATATGGAACTATTGATCAACTGAAGGATGTGGTGAAAAGTTTTCATGAAGTTGGAATCAAAGTGCTTGGAGATGCTGTTTTAAATCACCGCTGTGCTCACTCTAAGAATGCGAATGGTATTTGGAACATATTTGGAGGTCGTCTCAACTGGGATGATCGTGCAATTGTAGCTGATGATCCACATTTTCAGGGGAGGGGCAACAAGAGTAGTGGAGACAATTTTCATGCTGCTCCAAACATTGATCACTCACAGGATTTTGTGAGAAAGGATCTTAAAGAATGGCTATGCTGGCTGAGGGAAGAAATTGGGTATGATGGGTGGAGGCTTGACTTTGTCAGAGGATTTTGGGGTGGTTATGTAAAGGACTACCTGGAAGCAAGTGAGCCATACTTTGCGGTAGGAGAATACTGGGATTCCCTTAGTTATACATATGGTGAAATGGATCATAATCAAGACGCACATAGACAGAGGATTGTTGACTGGATTAATGCTACTGGTGGTACTGCTGGTGCATTTGATGTTACAACCAAAGGGATTCTTCACTCTGCTTTGGAAAGATGTGAATATTGGCGCTTGTCAGATCAGAAGGGAAAACCCCCTGGTGTTCTTGGATGGTGGCCATCTCGTGCTGTTACTTTTATAGAAAATCATGACACTGGTTCTACCCAGGGTCATTGGAGATTTCCAAGCGGAAAAGAAATGCAGGGATATGCGTACACTCTTACTCACCCAGGAACTCCATCAGTGTTCTTTGACCACATTTTCTCTCACTATAAAACTGAAATAGCAAAACTTATCTCTATCAGGAAGCAGAACAAGATCCACTGCAGGAGTACAGTTAAAATTTGCAAGGCAGAAAGGGATGTTTATGCAGCTATCATGGATGAAAAAGTTGCTATGAAGATTGGACCCGGTCATTTTGAACCACCTAGTGGTTCCCAAAGATGGTCCTTAGCTTTAGAGGGAAGAGACTATAAGATTTGGGAGGCATCATAA 2787 0.4112 MSICTTTTTTTTFSLDPLFSFNHYRGRERESSIHRSKPKLFSLTSSSNISLFNSNNNYDYYSYASCKSHKFLAPKFEAFATNTDTLESLQSSDVLFDQTFPINRTELVEGKIFVRLDQGKDLGNWELTVGCNLPGKWILHWGVSRVDDVGSEWDQPPRDMIPPGSIPIKDYAIDTPMKKSLSSTEADTFYEVRIDLKANNDISAINFVLKDEETGAWYQHKGRDFKVPLVSYVKEDANIIGPKKGFSLWPGALGQISSILLKSDTTNDKNQEDSSGSRNLKVENSQLEGFYVELPITKEVIVDNTISVSIRKCSETAKNILYLETDIPGDILLHWGVCRDDLKWWEIPPAPHPPETKAFKDRALRTKLQSRESGEGSSVQLSLGEEFSGFLFVLKLNDSTWINDMGDDFYIPLPLSGSLVVGNIEDQSEGVQMEVTEEAGQEESISAFTDGIINEIRHLVTDISSEKNRKTKSKEAQESILQEIEKLAAEAYSIFRSSVPTFSDETIVESEAAVETKTLVLPDLPPQISSGTGTGYEILCQGFNWESHKSGRWYMELKEKAAELASFGFTVIWLPPPTESVSPEGYMPKDLYNLNSRYGTIDQLKDVVKSFHEVGIKVLGDAVLNHRCAHSKNANGIWNIFGGRLNWDDRAIVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWLREEIGYDGWRLDFVRGFWGGYVKDYLEASEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIVDWINATGGTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMQGYAYTLTHPGTPSVFFDHIFSHYKTEIAKLISIRKQNKIHCRSTVKICKAERDVYAAIMDEKVAMKIGPGHFEPPSGSQRWSLALEGRDYKIWEAS 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02427 928 Pfam Alpha amylase, catalytic domain 564 817 IPR006047 GO:0005975
Cca01g02427 928 SMART alpha-amyl_c2 867 927 IPR012850 GO:0004556|GO:0005509|GO:0005975
Cca01g02427 928 SUPERFAMILY (Trans)glycosidases 535 854 IPR017853 -
Cca01g02427 928 Gene3D - 871 927 IPR013780 -
Cca01g02427 928 PANTHER ALPHA-AMYLASE 97 928 - -
Cca01g02427 928 Gene3D Glycosidases 537 870 - -
Cca01g02427 928 Pfam Alpha-amylase C-terminal beta-sheet domain 869 926 IPR012850 GO:0004556|GO:0005509|GO:0005975
Cca01g02427 928 SUPERFAMILY Glycosyl hydrolase domain 871 926 - -
Cca01g02427 928 PANTHER ALPHA-AMYLASE 3, CHLOROPLASTIC 97 928 - -
Cca01g02427 928 SMART aamy 537 866 IPR006047 GO:0005975
Cca01g02427 928 CDD AmyAc_arch_bac_plant_AmyA 538 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02427 Cca-Chr1 53320985 53333569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02427 13 928 Glycoside Hydrolase AT1G69830 65.359 0.0 1227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02427 K01176 - gmx:100788193 1731.46