Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0869 ATGTCAACATCTGTGAAGAGATTAGGAAAATGGGTCTCTTTGGTTTCCAAGAGGGGTTTGTCCACCTCATGCATTCAGAAAGATGTTAGTGAGAATGGTGTTAAATCATTGAACCTGTATTCTGCTATTAATCAGGCTCTTCATATTGCATTGGACACTGATCCTCGTGCTTATGTTTTTGGAGAAGATGTAGGCTTTGGTGGTGTGTTCCGTTGCACAACTGGATTAGCAGATCGATTTGGTAAAAATAGGGTTTTCAATACTCCTCTCTGTGAGCAGGGTATCGTTGGCTTTGGCATTGGTCTAGCAGCTATGGGAAATCGAGCCATAGCAGAAATCCAGTTTGCAGATTATATTTTTCCTGCTTTTGATCAGATTGTCAATGAAGCTGCTAAATTCAGATACCGGAGTGGAAACCAATTTAACTGCGGCGGTTTAACAATTAGAACCCCTTATGGAGCTGTTGGCCATGGTGGACATTACCACTCTCAATCTCCCGAGGCTTTCTTCTGTCATGTTCCTGGTATCAAAGTGGTCATCCCTCGAAGTCCAAAAGAAGCAAAAGGGTTATTGTTATCTTGCATACGAGATCCGAATCCTATTGTATTTTTTGAACCAAAGTGGCTTTATCGTTTGGCCGTTGAAGAAGTACCAGAGGATGATTACATGACGCCTTTATCTGAAGCTGAGGTGATTCGGCAAGGATGCGATATTACACTTGTTGGATGGGGAGCTCAATTATCTATAATGGAACAAGCTTGCCTTGATGCTGAAAAAGAGGGAATTTCTTGTGAATTGATAGATCTGAAGACACTAATTCCTTGGGATAAAGAAACTGTTGAGGCATCAGTAAAGAAGACAGGAAGACTGCTTATTAGTCATGAAGCTCCAGTGACTGGAGGTTTTGGCGCAGAAATCTCGGCTTCCATTCTTGAACGCTGCTTCTCACGGTTAGAGGCACCTGTAGCAAGAGTTTGTGGTTTAGACACTCCTTTTCCTCTTGTTTTTGAACCCTTCTACATGCCAACCAAGAATAAGATATTGGATGCAATTAAATCAACTGTCAACTACTGA 1074 0.4181 MSTSVKRLGKWVSLVSKRGLSTSCIQKDVSENGVKSLNLYSAINQALHIALDTDPRAYVFGEDVGFGGVFRCTTGLADRFGKNRVFNTPLCEQGIVGFGIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRTPYGAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPKEAKGLLLSCIRDPNPIVFFEPKWLYRLAVEEVPEDDYMTPLSEAEVIRQGCDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVKKTGRLLISHEAPVTGGFGAEISASILERCFSRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAIKSTVNY* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0869 357 Gene3D - 226 356 IPR009014 GO:0003824
Tpr4g0869 357 SMART Transket_pyr_3 37 212 IPR005475 -
Tpr4g0869 357 Pfam Transketolase, pyrimidine binding domain 38 211 IPR005475 -
Tpr4g0869 357 Gene3D - 34 225 - -
Tpr4g0869 357 CDD TPP_PYR_E1-PDHc-beta_like 42 207 - -
Tpr4g0869 357 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED 14 357 - -
Tpr4g0869 357 Pfam Transketolase, C-terminal domain 228 347 IPR033248 -
Tpr4g0869 357 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 32 219 IPR029061 -
Tpr4g0869 357 SUPERFAMILY TK C-terminal domain-like 221 357 IPR009014 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0869 Tpr-Chr4 8221528 8226360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0869 27 357 Acyl Lipid Metabolism Gene Families AT1G55510 92.145 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0869 K00167 - gmx:100802853 649.047