Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0169 . . . . . . . . . . . Apr10g0623 . . . . . Cca01g01707 . . . . Gma03g00578 . . Gso3g0575 . . . . . . . . . . . . Lja3g3200 . . . . . . Phco1g01630 . . Pste6g00405 Pumo7g01297 . . Spst4g01477 Ssu4g2198 . . . . Vian9g01216 . Vimu9g01283 Viun10g00757 . .
Pvu10g0170 . . . . . . . . . Amo12g2066 . Apr10g0622 . . . . . Cca01g01708 . . . . Gma03g00579 . . Gso3g0576 Lal14g0309 . . . . . . Lasa7g00519 . . . . Lja3g3199 . Mepo2g00627 . . Mtr4g0582 . Phco1g01631 . Psa7g5449 . Pumo7g01298 . . Spst4g01478 Ssu4g2199 . Tpr4g0865 Trre7g00606 Tsu06g00555 . . Vimu9g01282 Viun10g00756 Vivi5g00873 Vra9g1040
Pvu10g0171 . . . . . . . . . Amo12g2064 Amo02g2255 . . . . . . . . . . . . Gma01g01023 Gso1g0855 . Lal14g0307 . . . Lan1g0930 . . Lasa7g02226 . . . . . . . . . . . . . . Pste6g00404 . . . Spst4g02896 . . . . . . . Vimu9g01281 . Vivi5g02901 .
Pvu10g0172 . . . . . . . . . . . . . . . . . Cca01g01709 . . . . Gma03g00583 Gma01g01018 Gso1g0852 Gso3g0579 . . . . . . . Lasa7g02225 . . . . . . Mepo2g00629 . . Mtr4g0583 . Phco1g01633 . . . Pumo7g01299 Rops4g00043 Seca2g01774 Spst4g02894 Ssu4g2200 . Tpr4g0866 . Tsu06g00556 Vian9g01210 . . Viun10g00749 Vivi5g02900 Vra9g1041
Pvu10g0173 . . . . . . . . . Amo12g2061 . . . . . . . . . . . . . Gma01g01017 Gso1g0851 . . . . . . . . Lasa7g02224 . . . . Lja3g3198 . . . . . . . . . . . . . Spst4g02892 . . . . . . . . . Vivi5g02899 .
Pvu10g0174 . . . . . . . . . . . . . . . . . Cca01g01710 . . . . Gma03g00584 . . Gso3g0581 . . . . . . . Lasa7g02223 . . . . . . . . . . . Phco1g01635 . . . Pumo7g01315 Rops4g00044 Seca2g01772 Spst4g01482 Ssu4g2208 . Tpr4g0868 . Tsu06g00558 Vian9g01194 . . Viun10g00747 Vivi5g02898 .
Pvu10g0175 . . . . . . . . . Amo12g2059 Amo02g2239 . . . . . . . . . . . . . . . . . . . . . . Lasa7g02221 . . . . Lja3g3197 . . . . . . . . . . . . . Spst4g02891 . . . . . . . . . Vivi5g02880 .
Pvu10g0176 . . . . . . . . . . Amo02g2238 . . . . . . . . . . . Gma03g00586 . . . . . . . . . . Lasa7g02220 . . . . . . . . . . . Phco1g01636 . Psa7g5448 . . . . Spst4g01483 Ssu4g2209 . . . . . . Vimu9g01289 . . .
Pvu10g0177 . . . . . . . . . Amo12g2058 Amo02g2235 . . . . . . . . . . . . . . . . . . . . . . Lasa7g02217 . . . . Lja3g3196 . . . . . . . . . Pste6g00389 . . . Spst4g02890 . . . . . . . Vimu9g01290 . . .
Pvu10g0178 . . . . . . . . . . Amo02g2234 . . . . . . . . . . . Gma03g00591 . . . . . . . . . . Lasa7g02198 . . . . . . . . . Mtr4g0587 . Phco1g01638 . Psa7g5445 Pste6g00385 . . . Spst4g02888 Ssu4g2210 . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Spst Spst4g02892 Chr4 68606489 68607949 +
Spst Spst4g02890 Chr4 68585721 68587527 +
Pvu Pvu10g0169 Chr10 2640049 2641201 +
Apr Apr10g0623 Chr10 14560757 14561521 -
Cca Cca01g01707 Chr01 39661509 39664625 +
Gma Gma03g00578 Chr03 16529556 16529846 +
Gso Gso3g0575 Chr3 15361112 15362255 +
Lja Lja3g3200 Chr3 61843482 61844403 -
Phco Phco1g01630 Chr1 54105746 54106036 +
Pste Pste6g00405 Chr6 1371328 1371615 -
Pumo Pumo7g01297 Chr7 31905202 31906576 +
Spst Spst4g01477 Chr4 53368856 53369140 +
Ssu Ssu4g2198 Chr4 51225910 51226374 +
Vian Vian9g01216 Chr9 25590779 25593455 +
Vimu Vimu9g01283 Chr9 20869528 20870671 -
Viun Viun10g00757 Chr10 7908681 7909491 -
Pvu Pvu10g0170 Chr10 2642845 2647899 -
Amo Amo12g2066 Chr12 96780297 96784308 +
Apr Apr10g0622 Chr10 14547699 14551070 +
Cca Cca01g01708 Chr01 39666327 39669944 -
Gma Gma03g00579 Chr03 16535435 16538775 -
Gso Gso3g0576 Chr3 15366223 15370837 -
Lal Lal14g0309 Chr14 3954088 3959694 +
Lasa Lasa7g00519 Chr7 19523898 19528325 -
Lja Lja3g3199 Chr3 61801268 61804151 +
Mepo Mepo2g00627 Chr2 7459961 7464905 -
Mtr Mtr4g0582 Chr4 7408216 7413332 -
Phco Phco1g01631 Chr1 54109898 54114261 -
Psa Psa7g5449 Chr7 468781794 468785793 +
Pumo Pumo7g01298 Chr7 31912505 31916851 -
Spst Spst4g01478 Chr4 53371461 53379274 -
Ssu Ssu4g2199 Chr4 51231923 51235402 -
Tpr Tpr4g0865 Chr4 8186513 8192347 -
Trre Trre7g00606 Chr7 3868644 3873823 -
Tsu Tsu06g00555 Chr06 4758911 4764562 -
Vimu Vimu9g01282 Chr9 20829371 20835078 +
Viun Viun10g00756 Chr10 7900257 7905260 +
Vivi Vivi5g00873 Chr5 16729894 16734139 -
Vra Vra9g1040 Chr9 13122517 13127917 -
Pvu Pvu10g0171 Chr10 2653477 2657041 -
Amo Amo12g2064 Chr12 96738697 96741858 -
Amo Amo02g2255 Chr02 73702263 73705740 +
Gma Gma01g01023 Chr01 35817464 35822349 +
Gso Gso1g0855 Chr1 34207755 34212963 +
Lal Lal14g0307 Chr14 3850608 3854898 -
Lan Lan1g0930 Chr1 19996271 19999022 +
Lasa Lasa7g02226 Chr7 506050508 506051865 +
Pste Pste6g00404 Chr6 1356071 1361674 +
Spst Spst4g02896 Chr4 68630620 68632000 +
Vimu Vimu9g01281 Chr9 20818563 20822073 -
Vivi Vivi5g02901 Chr5 116930154 116932022 +
Pvu Pvu10g0172 Chr10 2661848 2664207 +
Cca Cca01g01709 Chr01 39778248 39781034 +
Gma Gma03g00583 Chr03 16710244 16713421 +
Gma Gma01g01018 Chr01 35642676 35646016 +
Gso Gso1g0852 Chr1 34043268 34046502 +
Gso Gso3g0579 Chr3 15564411 15567508 -
Lasa Lasa7g02225 Chr7 505996125 505997482 +
Mepo Mepo2g00629 Chr2 7489569 7494003 +
Mtr Mtr4g0583 Chr4 7417498 7422102 +
Phco Phco1g01633 Chr1 54158462 54160374 +
Pumo Pumo7g01299 Chr7 31937993 31940672 +
Rops Rops4g00043 Chr4 1163414 1166607 -
Seca Seca2g01774 Chr2 34186017 34194116 -
Spst Spst4g02894 Chr4 68617085 68618493 +
Ssu Ssu4g2200 Chr4 51270969 51273115 +
Tpr Tpr4g0866 Chr4 8207822 8211516 +
Tsu Tsu06g00556 Chr06 4769883 4774239 +
Vian Vian9g01210 Chr9 25479859 25482698 +
Viun Viun10g00749 Chr10 7800074 7805114 -
Vivi Vivi5g02900 Chr5 116894329 116898164 +
Vra Vra9g1041 Chr9 13130709 13133136 +
Pvu Pvu10g0173 Chr10 2668773 2671391 +
Amo Amo12g2061 Chr12 96683587 96688006 +
Gma Gma01g01017 Chr01 35606109 35611671 +
Gso Gso1g0851 Chr1 34006601 34011931 +
Lasa Lasa7g02224 Chr7 505856197 505857557 +
Lja Lja3g3198 Chr3 61789847 61792886 -
Spst Spst4g02892 Chr4 68606489 68607949 +
Vivi Vivi5g02899 Chr5 116864855 116866606 +
Pvu Pvu10g0174 Chr10 2683566 2686201 +
Cca Cca01g01710 Chr01 39810707 39816457 +
Gma Gma03g00584 Chr03 16884021 16889125 +
Gso Gso3g0581 Chr3 15651091 15656771 +
Lasa Lasa7g02223 Chr7 505739330 505740574 +
Phco Phco1g01635 Chr1 54188518 54190634 -
Pumo Pumo7g01315 Chr7 32487000 32489887 +
Rops Rops4g00044 Chr4 1169624 1173200 -
Seca Seca2g01772 Chr2 34105161 34108217 -
Spst Spst4g01482 Chr4 53435335 53444159 +
Ssu Ssu4g2208 Chr4 51596992 51599378 +
Tpr Tpr4g0868 Chr4 8217460 8220957 +
Tsu Tsu06g00558 Chr06 4783466 4786696 +
Vian Vian9g01194 Chr9 25085628 25096393 -
Viun Viun10g00747 Chr10 7753579 7757957 -
Vivi Vivi5g02898 Chr5 116864848 116897282 +
Pvu Pvu10g0175 Chr10 2690763 2693285 +
Amo Amo12g2059 Chr12 96628913 96631796 -
Amo Amo02g2239 Chr02 73326554 73329811 +
Lasa Lasa7g02221 Chr7 505623731 505625088 +
Lja Lja3g3197 Chr3 61703969 61712413 -
Spst Spst4g02891 Chr4 68589294 68591134 +
Vivi Vivi5g02880 Chr5 116539438 116541604 +
Pvu Pvu10g0176 Chr10 2701559 2704274 -
Amo Amo02g2238 Chr02 73302653 73306869 -
Gma Gma03g00586 Chr03 16910171 16915911 +
Lasa Lasa7g02220 Chr7 505553018 505554276 +
Phco Phco1g01636 Chr1 54200828 54206436 +
Psa Psa7g5448 Chr7 468732328 468736201 -
Spst Spst4g01483 Chr4 53447319 53451684 +
Ssu Ssu4g2209 Chr4 51602669 51606557 +
Vimu Vimu9g01289 Chr9 20965080 20967751 -
Pvu Pvu10g0177 Chr10 2709448 2712724 +
Amo Amo12g2058 Chr12 96588155 96592614 -
Amo Amo02g2235 Chr02 73261497 73264687 -
Lasa Lasa7g02217 Chr7 505373416 505374773 +
Lja Lja3g3196 Chr3 61689499 61702599 -
Pste Pste6g00389 Chr6 1298106 1301838 +
Spst Spst4g02890 Chr4 68585721 68587527 +
Vimu Vimu9g01290 Chr9 20973307 20975508 -
Pvu Pvu10g0178 Chr10 2738601 2744535 -
Amo Amo02g2234 Chr02 73221512 73226333 -
Gma Gma03g00591 Chr03 17615572 17620529 +
Lasa Lasa7g02198 Chr7 502845782 502847508 +
Mtr Mtr4g0587 Chr4 7449699 7455608 +
Phco Phco1g01638 Chr1 54263378 54268205 +
Psa Psa7g5445 Chr7 468664007 468667641 -
Pste Pste6g00385 Chr6 1277440 1298096 -
Spst Spst4g02888 Chr4 68581192 68583115 +
Ssu Ssu4g2210 Chr4 51632034 51636984 +
Lasa Lasa7g02198 Chr7 502845782 502847508 +
Vivi Vivi5g02880 Chr5 116539438 116541604 +