Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2053 ATGTCAAGAAGCTGTGTGCGAAGAATTGGAACATGGATCCCTTGTGTTTCCAAGAGAGGGTTTTCTAGTTCACCTTCTTCTTCATGCGTCCAAAAGAGCGGTTCTGAGCAAGGTCTCAAATCATTGAACCTTTATTCTGCAATTAACCAAGCTCTCCACATTGCTTTAGACACTGATCCACGTTCTTATGTTTTCGGAGAAGATGTGAGCTTTGGTGGGGTCTTCCGTTGTACAACAGGATTAGCAGACAAATTTGGGAAGAAAAGGGTTTTCAATACTCCCTTATGTGAACAAGGTATCGTTGGCTTTGGCATTGGTCTAGCGGCAATGGGAAATCGAGCCATAGCAGAAATTCAGTTTGCAGATTACATTTTTCCTGCTTTTGATCAGATTGTCAACGAAGCTGCTAAATTCAGATACCGAAGTGGGAACCAATTTAATTGTGGTGGTTTAACGATTAGAGCCCCTTATGGAGCTGTGGGCCATGGTGGGCATTACCATTCTCAATCCCCTGAGGCTTTTTTCTGTCATGTTCCTGGTATCAAAGTGGTCATCCCTCGAAGTCCCCGAGAAGCAAAAGGGCTATTGCTGTCTTGCATTCGAGATCCAAATCCTATCGTATTTTTTGAACCGAAGTGGCTATATCGTTTGGCTGTTGAAGAAGTACCAGAGGATGATTACATGTTGCCACTATCCGAGGCAGAGGTGGTTCGGCAGGGAAGTGATATTACACTTGTTGGATGGGGAGCTCAATTATCTATAATGGAACAAGCCTGTCTAGATGCTGAAAAAGAAGGAATTTCTTGTGAACTGATAGATCTGAAGACATTAATACCTTGGGATAAGGAAACAGTGGAGGCCTCAGTTAACAAGACAGGAAGGCTACTTATTAGTCATGAAGCTCCGGTAACTGGAGGTTTTGGTGCTGAAATCTCGGCTTCCATTGTCGAACGTTGCTTCTCGAGGTTAGAAGCCCCTGTAGCGAGAATCTGCGGTCTAGACACCCCTTTTCCTTTGGTGTTTGAGCCCTTCTACATGCCAACCAAGAATAAGATATTGGATGCTATTAAATCAACTGTCGGTTACTGA 1089 0.438 MSRSCVRRIGTWIPCVSKRGFSSSPSSSCVQKSGSEQGLKSLNLYSAINQALHIALDTDPRSYVFGEDVSFGGVFRCTTGLADKFGKKRVFNTPLCEQGIVGFGIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPYGAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPREAKGLLLSCIRDPNPIVFFEPKWLYRLAVEEVPEDDYMLPLSEAEVVRQGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVNKTGRLLISHEAPVTGGFGAEISASIVERCFSRLEAPVARICGLDTPFPLVFEPFYMPTKNKILDAIKSTVGY* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2053 362 Pfam Transketolase, C-terminal domain 233 352 IPR033248 -
Amo12g2053 362 Gene3D - 231 361 IPR009014 GO:0003824
Amo12g2053 362 Gene3D - 39 230 - -
Amo12g2053 362 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED 21 360 - -
Amo12g2053 362 SMART Transket_pyr_3 42 217 IPR005475 -
Amo12g2053 362 SUPERFAMILY TK C-terminal domain-like 226 361 IPR009014 GO:0003824
Amo12g2053 362 CDD TPP_PYR_E1-PDHc-beta_like 47 212 - -
Amo12g2053 362 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 41 242 IPR029061 -
Amo12g2053 362 Pfam Transketolase, pyrimidine binding domain 43 216 IPR005475 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2053 Amo-Chr12 96518230 96524147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2053 23 362 Acyl Lipid Metabolism Gene Families AT1G55510 89.118 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2053 K00167 - gmx:100802853 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2053 12 96518230 96524147 Amo02g2230 02 73160894 73166163 hybridization