Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0187 CTTCAAGGAAGAATAGCAGTAGCAACCCAGAATGCATGGCTAGGTGATAAATCTACGATAATTTTGATCACAAACGTGAATGGTCTCACTATTGATGGAACTGGAGGATCAATCGATGGCTTCGGTTCTACTTGGTGGGCATGCAAAAACTGTCCACGACCCTCGGTCCTTAGTTTCAATGCATGCAATGGTCTCAGTGTTAGTTATTTGAGTATCATGAATAGTCCAGAAGCTCACATAACCATAAATGGTTGTGTGGGTGCAACATTCTCTCATATTACCATTCAGTCTTCTGCTAATAGTCCCAACACTGATGGAATCGACATTTCTTCTTCCAAAAATATCTTGATAAAAGATTCCAATATAGCTGCTGGTGATGACTGCATTGCAATCATAGGTGAGTCCTCTTACATCAATGCTACTGGAGTTGCTTGTGGACCAGGCCATGGAATAAGCATTGGTAGCCTGGGTAGAAACGATGGCCATGACAAGGTGGAACACGTTTATGTATATGATTGCAGCTTCAACAAAACTACAAATGGAGCAAGAATAAAGACATTTCAGGGTGGACTAGGTTATGCCAGAAGCATCACTTATGAGAAAATTACATTAACACAGGTTTCCAACCCAATAATTATAAATCAAAACTATGTGAGTTTAAAGAGTGGAGGAGGAGTTGAAGTGAGTGGGGTGACATTTCGAGGGTTTACAGGAACATCTGCAGACGACAAAGCCATTACCTTAGCTTGCAGTTCACAAGGTTGTTTCAACATTGTTTTGGATCAAGTTACCATTAAATCTTCTGTACCAGGAAAACCAGCTTCTTGTTCTTGTACTAATGCACATGGAACAGCTACATCCACAGTTCCAAATTGTGCTTCCTTAATGAAATGA 894 0.4049 LQGRIAVATQNAWLGDKSTIILITNVNGLTIDGTGGSIDGFGSTWWACKNCPRPSVLSFNACNGLSVSYLSIMNSPEAHITINGCVGATFSHITIQSSANSPNTDGIDISSSKNILIKDSNIAAGDDCIAIIGESSYINATGVACGPGHGISIGSLGRNDGHDKVEHVYVYDCSFNKTTNGARIKTFQGGLGYARSITYEKITLTQVSNPIIINQNYVSLKSGGGVEVSGVTFRGFTGTSADDKAITLACSSQGCFNIVLDQVTIKSSVPGKPASCSCTNAHGTATSTVPNCASLMK* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0187 297 Gene3D - 1 288 IPR012334 -
Pvu10g0187 297 SUPERFAMILY Pectin lyase-like 7 293 IPR011050 -
Pvu10g0187 297 ProSitePatterns Polygalacturonase active site. 142 155 IPR000743 GO:0004650|GO:0005975
Pvu10g0187 297 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 293 - -
Pvu10g0187 297 SMART pbh1 223 250 IPR006626 -
Pvu10g0187 297 SMART pbh1 112 133 IPR006626 -
Pvu10g0187 297 SMART pbh1 85 111 IPR006626 -
Pvu10g0187 297 SMART pbh1 165 186 IPR006626 -
Pvu10g0187 297 Pfam Glycosyl hydrolases family 28 8 284 IPR000743 GO:0004650|GO:0005975
Pvu10g0187 297 PANTHER - 1 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0187 Pvu-Chr10 2807023 2808555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0187 1 295 Glycoside Hydrolase AT3G15720 44.918 5.16e-77 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0187 K01184 - gmx:100818729 384.8