Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01642 ATGCAAACACTAATCACTTGGGTTTTGATTCTTTGCTTTGTTTCACCATGTTTTTGTGAGAGGTTGATGGGATCTACAAACACATACAATGTGATTGACTATGGTGCTCAAGGTGATGCTAAAACTGATGATTCCCAGGCATTTTTAAGTGCATGGCAAAAGACATGCTCAGCACAAGGGGCATCAACTCTAGTTATACCATCAAAAGGAGTATTCTTATTGAAGAAGAACATAATCCTGAAAGGTCCTTGCCAAGCCACAAACATTAAAATTCAGCTTCAAGGAAGAATAACAGTAGCAACCCAGAATGCATGGCTAGGTGATAAATCTAAGATAATTTTGATCACAAACGTGAATGGTCTCACTATTGATGGAAGTGGAGGATTAATCGATGGCTTCGGTTCTTCTTGGTGGCTATGCAAAAAGTGTCCACGACCCTCGGTCCTTAGTTTCAATGCATGCAATGGTCTTAGTGTTAGTTATTTGAGTATCATAAATAGTCCAAAAGCTCACATAACCATAAATGGTTGTGTGGGTGCAACATTCTCTCATATTACCATTCAGTCTCCTGGTACAAGTCCTAACACTGATGGAATCGACATTTCTTCTTCCAAAAATATCTTGATAAAAGATTCCAATATAGCTGCTGGTGATGACTGTATTGCAATCATAGGTGACTCCTCTTACATCAATGCTACTGGAATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGTAGCCTGGGTAGAGACAATGGCCATGACAAGGTGGAACAAGTTCATGTATATAATTGCAGCTTCACCAAAACTACAAATGGAGCAAGAATCAAGACATTTCAGGGTGGACCAGGTTATGCCAGAAACATCATTTATGAGAAAATTACATTAACACAGGCTTACAACCCAATAATTATAGATCAAAACTATGTGGATTTAAAGAATGGAGGAGGAGTTCAAGTAAGTGGGGTAACATTTCGAGGGTTTAAAGGAACATCTGCAGACGACAAAGCCATTACCTTAGCTTGCAGTTCACAAGGTTGTTTCAACATTGTTTTGGATCAAGTTAGCATTACTTCTTCTGTACCAGGAAAACCAGCTTCTTGTTCTTGTATTAATGCACATGGAACAGCTACATCCACAGTTCCAAATTGTACTTCCTTAATGAAATGA 1170 0.3897 MQTLITWVLILCFVSPCFCERLMGSTNTYNVIDYGAQGDAKTDDSQAFLSAWQKTCSAQGASTLVIPSKGVFLLKKNIILKGPCQATNIKIQLQGRITVATQNAWLGDKSKIILITNVNGLTIDGSGGLIDGFGSSWWLCKKCPRPSVLSFNACNGLSVSYLSIINSPKAHITINGCVGATFSHITIQSPGTSPNTDGIDISSSKNILIKDSNIAAGDDCIAIIGDSSYINATGIACGPGHGISIGSLGRDNGHDKVEQVHVYNCSFTKTTNGARIKTFQGGPGYARNIIYEKITLTQAYNPIIIDQNYVDLKNGGGVQVSGVTFRGFKGTSADDKAITLACSSQGCFNIVLDQVSITSSVPGKPASCSCINAHGTATSTVPNCTSLMK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01642 389 ProSitePatterns Polygalacturonase active site. 234 247 IPR000743 GO:0004650|GO:0005975
Phco1g01642 389 Gene3D - 21 388 IPR012334 -
Phco1g01642 389 PANTHER - 26 376 - -
Phco1g01642 389 SMART pbh1 204 225 IPR006626 -
Phco1g01642 389 SMART pbh1 257 278 IPR006626 -
Phco1g01642 389 SMART pbh1 177 203 IPR006626 -
Phco1g01642 389 SMART pbh1 315 342 IPR006626 -
Phco1g01642 389 Pfam Glycosyl hydrolases family 28 56 374 IPR000743 GO:0004650|GO:0005975
Phco1g01642 389 SUPERFAMILY Pectin lyase-like 16 385 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01642 Phco-Chr1 54316066 54319982 Transposed