Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3193 ATGTCAACCTGTGTTGGGAAATTCCGAAGATGCGCCTCTTTGGTTTCCCGGAGGAGATTCTCCACCACCACCACCTCCTGCACTCAGAAGGATGCAGCTGAGCAAGGTTTGAAATCAATGAACCTTTATTCTGCCATTAACCAAGCTCTCCACATTGCCTTGGACTCTGATCCTCGTGCTTATGTTTTCGGAGAGGATGTAAGCTTTGGTGGGGTCTTCCGTTGCACGACTGGATTAGCAGATCGATTTGGGAAAAATAGGGTTCTCAATACTCCTCTCTGTGAGCAGGGTATCATTGGCTTTGGCATTGGTCTAGCAGCCATGGGTAATCGCGCCATAGCAGAAATCCAGTTTGCAGACTACATTTTTCCTGCTTTTGACCAGATTGTCAATGAAGCTGCTAAATTCAGATATCGGAGTGGAAACCAATTTAATTGTGGTGGCTTAACAATTAGAGCCCCTTATGGAGCCGTGGGCCATGGTGGGCATTACCACTCTCAATCCCCTGAGGCTTTCTTCTGCCATGTTCCTGGTATCAAGGTGGTTATCCCTCGCAGTCCGCAGCAAGCAAAAGGATTGTTGCTATCTAGTATACGAGATCCAAATCCTGTTGTATTTTTTGAGCCAAAGTGGCTTTACCGTTTGGCTGTTGAAGAAGTACCAGAGGATGATTACATGTTGCCTTTGTCTGAGGCCGAGGTGGTTCGGCAAGGATCTGATATTACACTTGTTGGATGGGGAGCCCAATTATCTATAATGGAACAAGCTTGCGCTGATGCTGAAAAAGAGGGAATTTCTTGTGAATTGATAGATCTGAAGACACTAATTCCTTGGGATAAGGAAACAGTGGAGGCCTCAGTTAAGAAGACAGGAAGACTGCTTGTTAGTCATGAAGCTCCTATAACTGGAGGTTTTGGTGCTGAAATCTCGGCTTCCATTGTTGAGCGCTGCTTCTCAAGGCTAGAGGCCCCTGTTGCAAGAGTTTGCGGTCTAGACACTCCTTTTCCTCTGGTTTTTGAACCCTTCTACATGCCAACCAAGAATAAGATATTGGATGCAATTAAATCAACAGTCAACTACTGA 1083 0.4571 MSTCVGKFRRCASLVSRRRFSTTTTSCTQKDAAEQGLKSMNLYSAINQALHIALDSDPRAYVFGEDVSFGGVFRCTTGLADRFGKNRVLNTPLCEQGIIGFGIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPYGAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPQQAKGLLLSSIRDPNPVVFFEPKWLYRLAVEEVPEDDYMLPLSEAEVVRQGSDITLVGWGAQLSIMEQACADAEKEGISCELIDLKTLIPWDKETVEASVKKTGRLLVSHEAPITGGFGAEISASIVERCFSRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAIKSTVNY* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3193 360 SMART Transket_pyr_3 40 215 IPR005475 -
Lja3g3193 360 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 39 240 IPR029061 -
Lja3g3193 360 Gene3D - 229 359 IPR009014 GO:0003824
Lja3g3193 360 Pfam Transketolase, C-terminal domain 231 350 IPR033248 -
Lja3g3193 360 Gene3D - 37 228 - -
Lja3g3193 360 CDD TPP_PYR_E1-PDHc-beta_like 45 210 - -
Lja3g3193 360 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED 16 360 - -
Lja3g3193 360 SUPERFAMILY TK C-terminal domain-like 224 360 IPR009014 GO:0003824
Lja3g3193 360 Pfam Transketolase, pyrimidine binding domain 40 214 IPR005475 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3193 Lja-Chr3 61622986 61629207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3193 12 360 Acyl Lipid Metabolism Gene Families AT1G55510 85.185 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3193 K00167 - gmx:100802853 649.047