Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00612 ATGTCAACATGTGTGAAGAGATTGGGAAAATGGGTCTCTTTGGTTTCCAAGAGGGGTTTATCCACCTCATGCATTCAGAAAGATGCTGCTGAGAATGGTGTTAAATCATTAAACCTCTATTCTGCTATTAATCAAGCTCTTTATATTGCATTAGACACTGATCCTCGTGCTTATGTTTTCGGAGAAGATGTAGGCTTTGGTGGCGTGTTCCGTTGCACAACTGGATTAGCAGATCGATTTGGTAAAAATAGGGTATTCAATACTCCTCTTTGTGAGCAGGGTATCGTTGGCTTTGGCATTGGTCTAGCAGCTATGGGGAATCGAGCCATAGCAGAAATCCAGTTTGCAGATTATATTTTTCCTGCTTTTGATCAGATTGTCAATGAAGCTGCTAAATTCAGATACCGGAGTGGAAACCAATTTAACTGTGGCGGTTTAACAATTAGAACCCCTTATGGAGCTGTTGGCCATGGTGGACATTACCACTCTCAATCTCCTGAGGCTTTCTTCTGTCATGTTCCTGGTATCAAAGTGGTCATCCCTCGAAGTCCAAAGGAAGCAAAAGGGTTATTATTATCTTGCATACGAGATCCAAATCCTATTGTATTTTTTGAACCAAAGTGGCTTTATCGTTTGGCCGTTGAAGAAGTACCAGAGGATGATTACATGACGCCTTTATCTGAAGCTGAGGTGATTCGGCAAGGATCCGATATTACACTTGTTGGATGGGGAGCTCAATTATCTATAATGGAACAAGCTTGCCTTGATGCTGAAAAAGAGGGAATTTCTTGTGAATTAATAGATTTGAAGACACTTATTCCTTGGGATAAAGAAACAGTGGAAGCCTCAGTAAAGAAGACAGGAAGGCTGCTGATTAGTCATGAAGCTCCGGTGACTGGAGGTTTTGGCGCTGAAATTTCGGCTTCCATTCTTGAACGTTGTTTCTCAAGGTTAGAGGCACCTGTAGCAAGAGTTTGTGGTTTAGACACTCCTTTTCCTCTTGTTTTTGAACCCTTCTACATGCCAACCAAGAATAAGATATTGGATGCAATTAAATCAACTGTCAACTACTGA 1074 0.4134 MSTCVKRLGKWVSLVSKRGLSTSCIQKDAAENGVKSLNLYSAINQALYIALDTDPRAYVFGEDVGFGGVFRCTTGLADRFGKNRVFNTPLCEQGIVGFGIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRTPYGAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPKEAKGLLLSCIRDPNPIVFFEPKWLYRLAVEEVPEDDYMTPLSEAEVIRQGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVKKTGRLLISHEAPVTGGFGAEISASILERCFSRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAIKSTVNY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00612 357 Pfam Transketolase, pyrimidine binding domain 38 211 IPR005475 -
Trre7g00612 357 Pfam Transketolase, C-terminal domain 228 347 IPR033248 -
Trre7g00612 357 Gene3D - 226 356 IPR009014 GO:0003824
Trre7g00612 357 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED 28 357 - -
Trre7g00612 357 FunFam Pyruvate dehydrogenase E1 beta subunit 34 225 - -
Trre7g00612 357 FunFam 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial 226 357 - -
Trre7g00612 357 Gene3D - 34 225 - -
Trre7g00612 357 CDD TPP_PYR_E1-PDHc-beta_like 42 207 - -
Trre7g00612 357 SMART Transket_pyr_3 37 212 IPR005475 -
Trre7g00612 357 SUPERFAMILY TK C-terminal domain-like 221 357 IPR009014 GO:0003824
Trre7g00612 357 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 36 237 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00612 Trre-Chr7 3896988 3901005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00612 26 357 Acyl Lipid Metabolism Gene Families AT1G55510 91.566 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00612 K00167 - gmx:100802853 648.662