Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02524 ATGAGCATCTCCACCACCCTTTCCTTTGACCCTCTCTTCAGCTTCAATCATTGTGTCAACAGAGAAAGAGAACCCTCCATTCACAGTTCCAAGCCAAAGCTATTCTCTCGTACTTCCTCCTCCACTCTCACCCTCTTCAACTCCAGCAGCAATAACTGTACCTATAACTTCGCCTCTTGGAAACCCCACAAGTTCCACACTCCAAAGTTTGAGGCTTTTGCTACAAACACTGATACCCTCGAGTCCCTTCAGTCTTTTGATGTCTTGTTCGACCAGACGTTCCCCATCAACCGAACTGAGCTGGTGGAGGGAAAGATCTATGTAAGATTGGATCATGGGAAGGATTTGGGAAATTGGGAGCTTACAGTGGGTTGCAATCTAACAGGGAAATGGATTCTTCATTGGGGAGTTTCTCATGTGGATGATGTTGGAAGTGAATGGGATCAACCTCCTCGGGATATGATACCACCTGGATCTGTTCCTATTAAGGACTATGCAATAGAAACACCCATGCTGAAATCATTGTCGTCTGCGGAAGGAGATGCTTTACATGAAGTCAAGATCGATATTAAACCCAACACTGATATTTCAGCGATTAATTTTGTTCTCAAGGATGAGGAAACTGGTGCATGGTATCAACACAAAGGAAGAGATTTCAAGGTTCCTCTGGTTAATTACCTTAAGGAGGATGCTAATATAATTGGACCCAAAAAAGGTTTTAGTTTGTGGCCAGGGGCCTTGGGGCAGATATCTAATATTCTCCTCAAGTCAGATGCAACGCATGACAAAGTTCAAGATGGCAACACTGGATCCCGAACTACACAAGTAGAAAATAGTGAACTAGAAGGTTTCTATATAGAGCTGCCTATTACCAAGGAAATTATCGTCAATAACTCTATCAATGTCTCCATTAGGAAATGTGCTGAAACAGCTAAGAATAATTTATATTTAGAAACAGATATACCCGGAGATATTCTCCTTCATTGGGGGGTTTGTAGGGATGATTTGAGGTGGTGGGAAATTCCACCTGCCCCTCATCCACCAGAGACAATAGCATTTAAGGACAGAGCATTAAGAACTAAATTACAGTCAAGAGACAATGGAGTGGGAAGTTCATTGCAGCACTCTTTGGGAGAAGAATTTTCTGGATTTCTTTTTGTTTTAAAGCTAAATGACGGTACTTGGATAAATGACATGGGAGATGACTTTTATATCCCTCTCCCAAGATCTAGTAGCTTAACTATTGGCAAGAGGGATGACCAATTTGAGGGTGTGCAGAGGGAAGTGACGGAAGTCACTGAAGAGTCAGGTCAAGAGGAATCTGCATCTACATTTACCGATGAAATAATCAATGAAATAAGGCATTTGGTGACAGATATTTCCTCTGAGAAGAACCGAAAGACAAAATCCAAAGAAGCACAAGAATCCATTCTTCAAGAAATTGAAAAGCTAGCTGCTGAGGCCTACAGCATCTTCAGAAGTTCAGTTCCAACTTTCTCAGAGGAAACTATTGTGGAATCTGAGGCTGCTGTCGAATCCAAGACACTAATATTTCCTGAATTGCCTCCACAAATATCCTCCGGAACAGGCACAGGGTATGAAATACTATGCCAAGGGTTTAATTGGGAATCTCATAAATCTGGAAGATGGTACATGGAGCTTAAAGAGAAAGCTGCAGAACTGGCATCATTTGGCATTACTGTGATATGGTTACCACCCCCCACAGAATCTGTTTCTCCTGAAGGATATATGCCAAAGGATTTATATAATTTAAATTCTAGAGAGCCCACTGTTAAGCATGTTGTTTACCCTCAAAAGCATATGCTATATGGAACTATTGATCAACTGAAGGATGTTGTAAAATGTTTTCATGAAGTTGGAATCAAAGTGCTTGGAGATGTTGTTTTAAATCACCGCTGTGCTCACTATAAGAATCCGAATGGTATTTGGAACTTATTTGGAGGTCGTCTCAACTGGGATGATCGTGCAATTGTAGCTGATGATCCACATTTTCAGGGGAGGGGCAACAAGAGTAGTGGAGACAATTTTCATGCTGCTCCAAACATTGATCACTCGCAGGAATTTGTGAGAAAGGATCTTAAAGAATGGTTACTGTGGTTGAGTAACTGCAGCCATTATGTGCCCCTTTTCTCTGTCACCGAGTGTCCTTTTCCTCCGGTGACCACTGCGATTGAGATCCTCTTCCTTTGCTTCTCCCTGGAAGACCGCGCTTCTCCTCTGTTGGTTAAGCTTCTCATCGGCAGATCGAGCTTCTACCCAACTAACCAGGCCTTCTGCATCCTCCCTTATACCCCAACCCCCTTTTTAGCCCATTTCAGGAGAGAAATCGGGTATGATGGGTGGAGGCTTGACTTTGTCAGAGGATTTTGGGGTGGTTATGTAAAGGACTACCTGGAAGCAAGTGAGCCATACTTTGCTGTAGGAGAGTATTGGGATTCTCTTAGTTATACATATGGTGAAATGGATCATAATCAAGATGCACATAGGCAAAGGATCGTTGACTGGATCAATGCTACTGGTGGTACTGCTGGCGCATTTGATGTTACAACCAAAGGAATTCTTCACTCTGCTTTGGAAAGATGTGAATACTGGCGCTTGTCAGATCAGAAGGGGAAGCCCCCTGGTGTTCTTGGATGGTGGCCATCTCGTGCTGTTACTTTTATAGAAAATCATGATACTGGTTCTACCCAGGGTCATTGGAGATTTCCCAGTGGAAAAGAAATGCAAGGATATGCTTACACTCTTACTCACCCAGGAACTCCATCAGTATTCTATGACCATCTTTTTTCTCAATATAAAACTGAAATATCAACACTTCTCTCTATCAGAAAGCGGAACAAGATCCACTGCAGGAGTACAGTTAAAATTTGCAAGGCAGAAAGGGATGTTTATGCAGCTTTGATAGATGAAAAAGTTGCTATGAAGATTGGACCTGGTCAATTTGAACCACCCAGTGGATCCCAAAAATGGTCCTCAGCTTTGGAGGGAAGGGACTATAAGATTTGGGAGGCATCCTTCCACACCACAGGAGTCAAACCTTGGCCGCTCTTAATCCCTACCCTGAATGGCAATCCCTTGGAGGATGATCAGTATTGGAAGAACCATGAAAACGAGTTTGATACATACTGGAAGGATCGGGCACAAAAGGCTGCAGAGGACAATAAAGCAGCATACTTTGAAGATCCATATTCAGTCTCAGGAAACTTCACTTCCTCTGTCAGCGAACTTATAGTTGGGAAGGATACGCGAAGGAACTTGAAGGGAAAGAACGGTGACGGGGGGCCATGCATGGCGACGAACCCCATTGACAGGTGCTGGAGGTGTGACCCCAACTGGGCCAACAACAGGCAGAAGCTTGCAGATTGTGTTCAGGGCTTTGGAAGAAACACTGTTGGAGGAAAAGGTGGTCCGATCTACGTGGTAACAGACCCTTCAGATGATAACATGGTTGACCTAAAGCCAGGAACTCTCCGCCATGCAGTTACACGTAATGGCCCGTTGTGGATCATCTTTGAACGCAACATGATCATCAACCTGAAGCAGGAGCTCATCATGACCAGCAACAAGACCATTGATGGAAGAGGCGTTGATTGGAGATCAATCAACGATGAGTACATGAACGGAGCATTTTTTGTGCAATCTGGGCCTGAGCTTGTTAACAGACCATTCTCAAGGCTAGACATGATCAAAGCCAAGCCAGGAAGTTACGTCGGAAGGCTTACACGCTATTCTGGAAGCCTTAAGTGCAGAATTCGTCACCGTTTCAAACAACACTCTTCAAGGTCTCCAACATCCTCGCCGCCGACCTTCACCGCATCTCCGGCCTCCGTACTTTGCCTCAATCTCCGCTCACCTCCGACGCCGCCATGGGCTTCGGGAAGTGCTTTGCAGACCCCCGCATCAGATCCCCGCTGTAGCGCCTCCTCGGTGCCTCCAACAACTCTGCCGCTGCCTCTAACGACTGTACCGGTGCATCTCGCTGCTGCTCTCTGTCGTCCTCTGTCGTTGCCTCCAACGATGTTTCTGCATTTCTGCTCCCTCCGCCGCTCCTCCCTCGTGGCGCATCATCTCCTCGATCGAGCAGAAGGAAGAGAGCTGCGACAACAAGGATCCAAGATCGAGTCCGAGCAATGGTCCAAGCGTTTCTGCGATTCTGCGTTTGTGGATTTGTGTCTCTGGAAATCTGTGTTTTCTGCCTTTGAGTTATCGTCTATGAACCGTTATAGAATTACAAATTTTTGCGTTTCTGACCTGAGCTTTTATATCATGGAAGAGTTGAAGATGACAGGAAATGTTACGAACAGTGTTCATGATGAAGGGGAAGGTAATGAGATGAATGTGAACCTTGATTCCCCTTCTAAGGAAACCTCGAGTGCGATTAAGTCCCCAGGGGCTCCTCGAGTCTGGGAAAAGGCGAAGGCAATACTGCTAATTTTGGTGTTGATAGGGTGGTTGAACCCTCCATTGGATAGATGGCTTGACCACTGA 4509 0.4498 MSISTTLSFDPLFSFNHCVNREREPSIHSSKPKLFSRTSSSTLTLFNSSSNNCTYNFASWKPHKFHTPKFEAFATNTDTLESLQSFDVLFDQTFPINRTELVEGKIYVRLDHGKDLGNWELTVGCNLTGKWILHWGVSHVDDVGSEWDQPPRDMIPPGSVPIKDYAIETPMLKSLSSAEGDALHEVKIDIKPNTDISAINFVLKDEETGAWYQHKGRDFKVPLVNYLKEDANIIGPKKGFSLWPGALGQISNILLKSDATHDKVQDGNTGSRTTQVENSELEGFYIELPITKEIIVNNSINVSIRKCAETAKNNLYLETDIPGDILLHWGVCRDDLRWWEIPPAPHPPETIAFKDRALRTKLQSRDNGVGSSLQHSLGEEFSGFLFVLKLNDGTWINDMGDDFYIPLPRSSSLTIGKRDDQFEGVQREVTEVTEESGQEESASTFTDEIINEIRHLVTDISSEKNRKTKSKEAQESILQEIEKLAAEAYSIFRSSVPTFSEETIVESEAAVESKTLIFPELPPQISSGTGTGYEILCQGFNWESHKSGRWYMELKEKAAELASFGITVIWLPPPTESVSPEGYMPKDLYNLNSREPTVKHVVYPQKHMLYGTIDQLKDVVKCFHEVGIKVLGDVVLNHRCAHYKNPNGIWNLFGGRLNWDDRAIVADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRKDLKEWLLWLSNCSHYVPLFSVTECPFPPVTTAIEILFLCFSLEDRASPLLVKLLIGRSSFYPTNQAFCILPYTPTPFLAHFRREIGYDGWRLDFVRGFWGGYVKDYLEASEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIVDWINATGGTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMQGYAYTLTHPGTPSVFYDHLFSQYKTEISTLLSIRKRNKIHCRSTVKICKAERDVYAALIDEKVAMKIGPGQFEPPSGSQKWSSALEGRDYKIWEASFHTTGVKPWPLLIPTLNGNPLEDDQYWKNHENEFDTYWKDRAQKAAEDNKAAYFEDPYSVSGNFTSSVSELIVGKDTRRNLKGKNGDGGPCMATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTVGGKGGPIYVVTDPSDDNMVDLKPGTLRHAVTRNGPLWIIFERNMIINLKQELIMTSNKTIDGRGVDWRSINDEYMNGAFFVQSGPELVNRPFSRLDMIKAKPGSYVGRLTRYSGSLKCRIRHRFKQHSSRSPTSSPPTFTASPASVLCLNLRSPPTPPWASGSALQTPASDPRCSASSVPPTTLPLPLTTVPVHLAAALCRPLSLPPTMFLHFCSLRRSSLVAHHLLDRAEGRELRQQGSKIESEQWSKRFCDSAFVDLCLWKSVFSAFELSSMNRYRITNFCVSDLSFYIMEELKMTGNVTNSVHDEGEGNEMNVNLDSPSKETSSAIKSPGAPRVWEKAKAILLILVLIGWLNPPLDRWLDH 1502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02524 1502 Gene3D - 1106 1204 IPR012334 -
Vian1g02524 1502 SUPERFAMILY (Trans)glycosidases 776 937 IPR017853 -
Vian1g02524 1502 SUPERFAMILY Glycosyl hydrolase domain 955 1010 - -
Vian1g02524 1502 PRINTS Pollen allergen Amb family signature 1153 1178 IPR018082 -
Vian1g02524 1502 PRINTS Pollen allergen Amb family signature 1189 1205 IPR018082 -
Vian1g02524 1502 PRINTS Pollen allergen Amb family signature 1129 1146 IPR018082 -
Vian1g02524 1502 Gene3D Glycosidases 773 956 - -
Vian1g02524 1502 MobiDBLite consensus disorder prediction 1446 1467 - -
Vian1g02524 1502 SMART aamy 534 958 IPR006047 GO:0005975
Vian1g02524 1502 SMART alpha-amyl_c2 951 1011 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vian1g02524 1502 Pfam Pectate lyase, N terminus 1045 1093 IPR007524 GO:0030570
Vian1g02524 1502 SUPERFAMILY (Trans)glycosidases 533 709 IPR017853 -
Vian1g02524 1502 MobiDBLite consensus disorder prediction 1446 1469 - -
Vian1g02524 1502 Pfam Alpha amylase, catalytic domain 561 640 IPR006047 GO:0005975
Vian1g02524 1502 SUPERFAMILY Pectin lyase-like 1107 1206 IPR011050 -
Vian1g02524 1502 Gene3D - 957 1011 IPR013780 -
Vian1g02524 1502 PANTHER ALPHA-AMYLASE 510 1015 - -
Vian1g02524 1502 CDD AmyAc_arch_bac_plant_AmyA 535 961 - -
Vian1g02524 1502 Gene3D Glycosidases 534 712 - -
Vian1g02524 1502 Pfam Alpha-amylase C-terminal beta-sheet domain 952 1010 IPR012850 GO:0004556|GO:0005509|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02524 Vian-Chr1 35707123 35745003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02524 72 707 Glycoside Hydrolase AT1G69830 60.849 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02524 K01176 - gmx:100788193 1223.38