Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00559 ATGGGAAATCGAGCCATAGCAGAAATCCAGTTTGCAGATTATATTTTTCCTGCTTTTGATCAGATTGTCAATGAAGCTGCTAAATTCAGATACCGGAGTGGAAACCAATTTAACTGTGGCGGTTTAACAATTAGAACCCCTTATGGAGCTGTTGGCCATGGTGGACATTACCACTCTCAATCTCCTGAGGCTTTCTTCTGTCATGTTCCTGGTATCAAAGTGGTCATCCCTCGAAGTCCAAAGGAAGCGAAAGGGTTATTGTTATCTTGCATACGAGATCCAAATCCTATTGTATTTTTTGAACCAAAGTGGCTTTATCGTTTGGCCGTTGAAGAAGTACCAGAGGATGATTACATGACGCCTTTATCAGAAGCTGAGGTGATTCGGCAAGGATGCGATATTACACTTGTTGGATGGGGAGCTCAATTATCTATAATGGAACAAGCTTGCCTTGATGCTGAAAAAGAAGGAATTTCTTGTGAATTGATAGATCTGAAGACACTAATTCCTTGGGATAAAGAAACTGTTGAGGCATCAGTAAAGAAGACAGGAAGACTGCTTATTAGTCATGAAGCTCCGGTGACTGGAGGTTTTGGTGCAGAAATCTCAGCTTCCATTCTTGAACGCTGCTTCTCAAGGTTAGAGGCACCTGTAGCGAGAGTTTGTGGTTTAGACACTCCTTTTCCTCTTGTTTTTGAACCATTCTACATGCCAACCAAGAATAAGATATTGGATGCAATTAAATCAACTGTCAATTACTGA 762 0.4108 MGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRTPYGAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPKEAKGLLLSCIRDPNPIVFFEPKWLYRLAVEEVPEDDYMTPLSEAEVIRQGCDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVKKTGRLLISHEAPVTGGFGAEISASILERCFSRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAIKSTVNY 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00559 253 Gene3D - 122 252 IPR009014 GO:0003824
Tsu06g00559 253 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 2 133 IPR029061 -
Tsu06g00559 253 Pfam Transketolase, pyrimidine binding domain 3 107 IPR005475 -
Tsu06g00559 253 Pfam Transketolase, C-terminal domain 124 243 IPR033248 -
Tsu06g00559 253 SMART Transket_pyr_3 1 108 IPR005475 -
Tsu06g00559 253 Gene3D - 1 121 - -
Tsu06g00559 253 SUPERFAMILY TK C-terminal domain-like 117 253 IPR009014 GO:0003824
Tsu06g00559 253 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED 1 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00559 Tsu-Chr6 4786955 4791101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00559 1 253 Acyl Lipid Metabolism Gene Families AT1G55510 93.281 0.0 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00559 K00167 - gmx:100802853 505.368