Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0589 ATGTCACCATGTGTGAAGAGATTGGGAAAATGGGTGTCTTTGGTTTCAAGGAGGGGTTTGTCAACTTCCATTGTTCAGAAGGATGCTGCTGCTGAGAATGGTGTTAAATCATTGAACCTTTATTCTGCTGTTAATCAAGCTCTTCATATTGCTTTGGACACTGATCCTCGTGCGTATGTTTTCGGAGAAGATGTAGGCTTTGGTGGCGTGTTCCGTTGCACAACCGGATTAGCAGATCGATTTGGTAAAAAAAGGGTTTTCAATACTCCTCTTTGTGAGCAGGGTATCGTTGGCTTTGGAATTGGTCTAGCAGCTATGGGAAATCGAGCCATAGCAGAAATCCAGTTTGCAGATTATATTTTTCCTGCTTTTGATCAGATTGTCAATGAAGCTGCTAAGTTTAGATACCGGAGCGGAAACCAATTTAATTGTGGCGGTTTAACAATTAGAACTCCTTATGGAGCTGTTGGCCATGGTGGACATTACCACTCTCAATCTCCTGAGGCTTTCTTCTGTCATGTTCCTGGTATCAAAGTCGTCATCCCTCGAAGTCCAAAGGAAGCGAAAGGGTTATTGTTATCTTGCATTCGAGATCCAAATCCTATTGTATTTTTTGAACCAAAGTGGCTTTATCGTTTGGCCGTTGAAGAAGTACCAGAAGGTGATTACATGTTGCCTTTATCTGAGGCCGAGGTGATTCGAGAAGGAAGCGATATTACACTTGTTGGATGGGGAGCTCAATTGTCTATAATGGAACAAGCTTGTGTTGATGCTGAAAAAGAGGGAATTTCTTGTGAATTGATAGATCTGAAGACACTAATTCCTTGGGATAAAGAAACTGTGGAGGCATCAGTAAAAAAGACAGGAAGACTTCTTATTAGTCATGAAGCTCCGGTGACCGGAGGTTTTGGTGCTGAAATCTCAGCCTCGATTCTTGAACGCTGTTTCTCAAGGTTAGAGGCCCCTGTAGCAAGAGTTTGTGGCCTAGACACTCCTTTTCCTCTGGTTTTTGAACCTTTCTACATGCCAACCAAGAATAAGATATTGGATGCAATTAAATCAACTGTCAGCTACTAA 1077 0.4215 MSPCVKRLGKWVSLVSRRGLSTSIVQKDAAAENGVKSLNLYSAVNQALHIALDTDPRAYVFGEDVGFGGVFRCTTGLADRFGKKRVFNTPLCEQGIVGFGIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRTPYGAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPKEAKGLLLSCIRDPNPIVFFEPKWLYRLAVEEVPEGDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACVDAEKEGISCELIDLKTLIPWDKETVEASVKKTGRLLISHEAPVTGGFGAEISASILERCFSRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAIKSTVSY* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0589 358 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED 15 357 - -
Mtr4g0589 358 Pfam Transketolase, C-terminal domain 229 348 IPR033248 -
Mtr4g0589 358 SUPERFAMILY TK C-terminal domain-like 222 357 IPR009014 GO:0003824
Mtr4g0589 358 Gene3D - 227 357 IPR009014 GO:0003824
Mtr4g0589 358 CDD TPP_PYR_E1-PDHc-beta_like 43 208 - -
Mtr4g0589 358 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 37 238 IPR029061 -
Mtr4g0589 358 Pfam Transketolase, pyrimidine binding domain 39 212 IPR005475 -
Mtr4g0589 358 SMART Transket_pyr_3 38 213 IPR005475 -
Mtr4g0589 358 Gene3D - 35 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0589 Mtr-Chr4 7478034 7483599 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0589 21 358 Acyl Lipid Metabolism Gene Families AT1G55510 89.941 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0589 K00167 - gmx:100802853 644.039