Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01484 ATGTCAACCAAGTTTGGAAGATTGGTATCTTTGGTTTGTAAGAGGGGATTTTCCATCTCCACCAGCGTTCAAAAGGGTGCATCCGAGCAAGGTGTGAAATCATTGAACCTTTGTTCTGCAATTAATCAGGCTCTCCAGATTGCATTGGACTCTGACCCCCGTTCTTATGTTTTTGGAGAGGATGTAAGCTTTGGTGGTGTCTTCCGTTGCACAGCTGGATTAGCAGACCAATTTGGTAAAAAGAGGGTTTTCAATACTCCTCTCTGTGAGCAGGGTATAGTTGGTTTTGGCATTGGTCTAGCAGCTATGGGAAATCGAGCCATAGCAGAAATCCAGTTTGCAGATTACATTTTCCCTGCTTTTGACCAGATTGTCAATGAAGCTGCTAAATTTAGATACCGGAGTGGGAACCAATTTAATTGTGGCGGTTTAACAATTAGAACCCCTTATGGAGCTGTGGGCCATGGTGGACATTACCACTCTCAGTCCCCGGAGGCTTTCTTCTGTCATGTTCCTGGTATTAAAGTGGTCATCCCTAGAAGTCCACGACAAGCAAAAGGGTTGTTGCTATCTTGCATTCGAGATCCAAATCCTATAGTATTTTTTGAACCAAAGTGGCTTTATCGGTTGGCTGTGGAAGAAGTACCGGAGGATGATTACATGCTGCCTTTATCTGAGGCTGAGGTAATTCGGGAAGGAAGTGATATAACCCTTGTTGGATGGGGAGCTCAATTATCTATAATGAAAGAAGCTTGTCTTGACGCTGAAAAAGAGGGAATTTCTTGTGAATTGATTGATCTGAAGACACTAATTCCTTGGGATAAGGAAACAGTAGAGGCCTCAGTTAATAAGACAGGAAGATTGCTCGTTAGTCATGAAGCTCCCATAACTGGAGGTTTTGGTGCTGAAGTCTCAGCTTCCATTGTTGAGCGTTGCTTCTCAAGGTTAGAGGCTCCTGTGGCAAGAGTTTGTGGTCTGGACACTCCTTTTCCTTTGGTTTTTGAACCTTTCTACATGCCAACCAAAAATAAGATATTGGATGCAATTAAATCAACTGTGAAGTACTGA 1068 0.4307 MSTKFGRLVSLVCKRGFSISTSVQKGASEQGVKSLNLCSAINQALQIALDSDPRSYVFGEDVSFGGVFRCTAGLADQFGKKRVFNTPLCEQGIVGFGIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRTPYGAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPRQAKGLLLSCIRDPNPIVFFEPKWLYRLAVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMKEACLDAEKEGISCELIDLKTLIPWDKETVEASVNKTGRLLVSHEAPITGGFGAEVSASIVERCFSRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAIKSTVKY 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01484 355 SMART Transket_pyr_3 35 210 IPR005475 -
Spst4g01484 355 SUPERFAMILY TK C-terminal domain-like 219 355 IPR009014 GO:0003824
Spst4g01484 355 Gene3D - 32 223 - -
Spst4g01484 355 FunFam Pyruvate dehydrogenase E1 beta subunit 32 223 - -
Spst4g01484 355 Pfam Transketolase, C-terminal domain 226 345 IPR033248 -
Spst4g01484 355 Gene3D - 224 354 IPR009014 GO:0003824
Spst4g01484 355 FunFam 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial 224 355 - -
Spst4g01484 355 Pfam Transketolase, pyrimidine binding domain 36 209 IPR005475 -
Spst4g01484 355 CDD TPP_PYR_E1-PDHc-beta_like 40 205 - -
Spst4g01484 355 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED 27 355 - -
Spst4g01484 355 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 34 235 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01484 Spst-Chr4 53456521 53461967 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01484 18 355 Acyl Lipid Metabolism Gene Families AT1G55510 86.982 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01484 K00167 - gmx:100802853 685.256