Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2211 ATGTTAACCAAGTTTGGAAGATTGGTCTCTTTGGTTTCCAAGAGGGGATTTTCCACCTCCACCAGCATTCAAAAGGGTGCTTCTGAGCAAGGTCTGAAATCGTTGAACCTATGTTCTGCAATTAATCAGGCTCTCCACATTGCCTTGGACACCGATCCCCGTTCTTATGTTTTTGGAGAGGATGTAAGCTTTGGTGGGGTATTCCGTTGCACAACTGGATTAGCAGACCAATTTGGTAAAAAAAGGGTTTTCAATACTCCTCTCTGTGAGcagGGTATCGTCGGTTTTGGCATTGGTCTAGCAGCTATGGGAAATCAAGCCATAGCAGAAATCCAGTTTGCAGATTACATTTTCCCTGCTTTTGACCAGATTGTCAATGAAGCTGCTAAATTCAGATACCGGAGtgggaaccaatttaattgtGGTGGTTTAACAATTAGAGCCCCTTATGGGGCTGTGGGCCACGGTGGGCATTACCACTCTCAATCCCCTGAGGCTTTCTTCTGTCATGTTCCTGGTATCAAAGTGGTCATCCCTCGAAGTCCACGACAAGCAAAAGGATTATTGCTATCTTGCATACGAGATCCAAAtcctatagtattttttgaaCCAAAGTGGCTTTATCGTTTGGCTGTTGAAGAAGTACCGGAGGATGATTACATGCTGCCTTTATCTGAGGCTGAGGTAATTCGGCAAGGAAGTGATGTAACACTTGTTGGATGGGGAGCTCAATTATCTACAATGGAACAAGCTTGTCTTGATGCTGAAAAAGAGGgaatttcttgtgaattgattgaTCTGAAGACACTAATTCCTTGGGATAAGGAAACAGTAGAGGCCTCAGTTAAGAAGACAGGAAGATTGCTTGTTAGTCATGAAGCTCCTATAACTGGAGGTTTTGGTGCTGAAATCTCAGCTTCCATTGTTGAACGCTGCTTCTCAAGGTTAGAGGCACCTATAGCAAGAATTTGTGGTCTGGACACTCCTTTTCCTTTGGTTTTTGAACCTTTCTACATGCCAACCAAAAATAAGATACTGGATGCAATTAAATCAACTGTGAATTACTAA 1068 0.4101 MLTKFGRLVSLVSKRGFSTSTSIQKGASEQGLKSLNLCSAINQALHIALDTDPRSYVFGEDVSFGGVFRCTTGLADQFGKKRVFNTPLCEQGIVGFGIGLAAMGNQAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPYGAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPRQAKGLLLSCIRDPNPIVFFEPKWLYRLAVEEVPEDDYMLPLSEAEVIRQGSDVTLVGWGAQLSTMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVKKTGRLLVSHEAPITGGFGAEISASIVERCFSRLEAPIARICGLDTPFPLVFEPFYMPTKNKILDAIKSTVNY 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2211 355 CDD TPP_PYR_E1-PDHc-beta_like 40 205 - -
Ssu4g2211 355 SMART Transket_pyr_3 35 210 IPR005475 -
Ssu4g2211 355 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED 14 355 - -
Ssu4g2211 355 Pfam Transketolase, pyrimidine binding domain 36 209 IPR005475 -
Ssu4g2211 355 Pfam Transketolase, C-terminal domain 226 345 IPR033248 -
Ssu4g2211 355 Gene3D - 32 223 - -
Ssu4g2211 355 SUPERFAMILY TK C-terminal domain-like 219 355 IPR009014 GO:0003824
Ssu4g2211 355 Gene3D - 224 354 IPR009014 GO:0003824
Ssu4g2211 355 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 34 235 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2211 Ssu-Chr4 51653063 51659039 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2211 18 355 Acyl Lipid Metabolism Gene Families AT1G55510 88.166 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2211 K00167 - gmx:100802853 697.197