Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2054 AACGAAATCCGATTCTTCGAGCTCAACACCGGAGCCAAGATCCCCTCCGTCGGCCTGGGAACATGGCAGTCCAATCCTGGCCTCGTCGGTGAAGCTGTTGCCGCTGCCATCAAGATTGGTTATCGCCACATTGATTGTGCTCAAATATATGGCAATGAGAAGGAGAAGCTTTTAGAAGATGAAGGGTGTAGTGAAAACGTGAGGATTTGCAATACCGATCATGCTCCAGAAGATGTGCCACTAGCACTGGACAGGACTTTGAAAGATTTGCAGCTTGATTATGTGGATTTGTACCTTATTCACTGGCCTGCTCCAATGAAGAAAGGATCAGTGGGCTTTAAGCCTGAAAATCTTGTGCCGCCTGACATACCTAGCACTTGGAGAGCAATGGAAGCACTATATGACTCTGGCAAGGCTCGAGCTATAGGTGTAAGCAATTTCTCCTCCAAGAAGCTTGGGGACTTGCTGGAGGTTGCTCGGGTTCCTCCTGCTGTCAACCAGGTGGAGTGTCATCCTTCTTGGCAGCAGGACAAACTCCGGGCTTTCTGCAAATCCAAAGGTGTCCACCTCTCTGGCTATTCACCTTTGGGCTCCCCGGGAACAACCTGGCTGAAAAGTGATGTTCTTAAGCATCCAGTTCTAAATATGATTGCAGAGAAACTAGGCAAGACTCCTGCGCAGGTAGCTCTGAGGTGGGGACTGCAAATGGGCCATAGTGTGCTGCCCAAGAGTACACATGAAGCAAGAATAAGGGAAAATTTTGATGCACGATTAGTGAGGGGTACCACTTTCATTCATGAAACTTACGGTGTCTACAGATCTCTTGAGCAATTTTGGGATGGTGAAATCTAA 852 0.4812 NEIRFFELNTGAKIPSVGLGTWQSNPGLVGEAVAAAIKIGYRHIDCAQIYGNEKEKLLEDEGCSENVRICNTDHAPEDVPLALDRTLKDLQLDYVDLYLIHWPAPMKKGSVGFKPENLVPPDIPSTWRAMEALYDSGKARAIGVSNFSSKKLGDLLEVARVPPAVNQVECHPSWQQDKLRAFCKSKGVHLSGYSPLGSPGTTWLKSDVLKHPVLNMIAEKLGKTPAQVALRWGLQMGHSVLPKSTHEARIRENFDARLVRGTTFIHETYGVYRSLEQFWDGEI* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2054 283 Gene3D - 2 283 IPR036812 -
Amo12g2054 283 PRINTS Aldo-keto reductase signature 164 193 IPR020471 GO:0016491
Amo12g2054 283 PRINTS Aldo-keto reductase signature 36 60 IPR020471 GO:0016491
Amo12g2054 283 PRINTS Aldo-keto reductase signature 130 147 IPR020471 GO:0016491
Amo12g2054 283 PRINTS Aldo-keto reductase signature 208 232 IPR020471 GO:0016491
Amo12g2054 283 CDD AKR_AKR4C1-15 4 255 IPR044498 GO:0016491
Amo12g2054 283 ProSitePatterns Aldo/keto reductase family signature 2. 130 147 IPR018170 GO:0016491
Amo12g2054 283 SUPERFAMILY NAD(P)-linked oxidoreductase 6 256 IPR036812 -
Amo12g2054 283 Pfam Aldo/keto reductase family 17 257 IPR023210 -
Amo12g2054 283 PANTHER ALDO-KETO REDUCTASE FAMILY 4 MEMBER C9-LIKE 3 282 - -
Amo12g2054 283 PIRSF AKR 1 260 IPR020471 GO:0016491
Amo12g2054 283 PANTHER ALDO/KETO REDUCTASE 3 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2054 Amo-Chr12 96535965 96539305 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2054 K00002 - gmx:100781137 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2054 12 96535965 96539305 Amo12g2054 12 96535965 96539305 ECH
Amo12g2054 12 96535965 96539305 Amo02g2232 02 73176646 73179870 hybridization