Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2230 ATGTCAAGAAGCTGTGTGCGAAGAATTGGAACATGGATCCCTTGTGTTTCCAAGAGAGGTTCTTATGTTTTCGGAGAAGATGTGAGCTTTGGTGGGGTCTTCCGTTGTACAACAGGATTAGCAGACAAATTTGGGAAGAAAAGGGTTTTCAATACTCCCTTATGTGAACAAGGTATCATTGGCTTTGGCATTGGTCTAGCGGCAATGGGAAATCGAGCCATAGCAGAAATTCAGTTTGCAGATTACATTTTCCCTGCTTTTGATCAGGCATTCTCCCCTCTCACGATTGTCAACGAAGCTGCTAAATTCAGATACCGAAGTGGGAACCAATTTAATTGTGGTGGTTTAACGATTAGAGCCCCTTATGGAGCTGTGGGCCATGGTGGGCATTACCATTCTCAATCTCCTGAGGCTTTTTTCTGTCATGTTCCTGGTATCAAAGTGGTCATCCCTCGAAGTCCCCGAGAAGCAAAAGGGCTATTGCTGTCTTGCATTCGAGATCCAAATCCTATCTGGCTATATCGTTTGGCTGTCGAAGAAGTACCAGAGGATGATTACATGTTGCCACTATCCGAGGCAGAGGTGGTTCGGCAGGGAAGTGATATTACACTTGTTGGATGGGGAGCTCAGTTATCTATAATGGAACAAGCCTGTCTAGATGCTGAAAAAGAAGGAATTTCTTGTGAACTGATAGATCTGAAGACATTAATACCTTGGGATAAGGAAACAGTGGAGGCCTCAGTTAACAAGACAGGAAGGCTACTTATTAGTCATGAAGCTCCGGTAACTGGAGGTTTTGGTGCTGAAATCTCGGCTTCCATTGTCGAACGTTGCTTCTCGAGGTTAGAAGCCCCTGTAGCGAGAATCTGCGGTCTAGACACCCCTTTTCCTTTGGTGTTTGAGCCCTTCTACATGCCAACCAAGAATAAGATATTGGATGCTATTAAATCAACTGTTGGATACTGA 966 0.4451 MSRSCVRRIGTWIPCVSKRGSYVFGEDVSFGGVFRCTTGLADKFGKKRVFNTPLCEQGIIGFGIGLAAMGNRAIAEIQFADYIFPAFDQAFSPLTIVNEAAKFRYRSGNQFNCGGLTIRAPYGAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPREAKGLLLSCIRDPNPIWLYRLAVEEVPEDDYMLPLSEAEVVRQGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVNKTGRLLISHEAPVTGGFGAEISASIVERCFSRLEAPVARICGLDTPFPLVFEPFYMPTKNKILDAIKSTVGY* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2230 321 SUPERFAMILY TK C-terminal domain-like 185 320 IPR009014 GO:0003824
Amo02g2230 321 Gene3D - 190 320 IPR009014 GO:0003824
Amo02g2230 321 CDD TPP_PYR_E1-PDHc-beta_like 22 171 - -
Amo02g2230 321 Pfam Transketolase, pyrimidine binding domain 23 172 IPR005475 -
Amo02g2230 321 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 22 201 IPR029061 -
Amo02g2230 321 Gene3D - 16 189 - -
Amo02g2230 321 Pfam Transketolase, C-terminal domain 192 311 IPR033248 -
Amo02g2230 321 SMART Transket_pyr_3 3 181 IPR005475 -
Amo02g2230 321 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED 20 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2230 Amo-Chr2 73160894 73166163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2230 21 321 Acyl Lipid Metabolism Gene Families AT1G55510 87.948 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2230 K00167 - gmx:100802853 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2053 12 96518230 96524147 Amo02g2230 02 73160894 73166163 hybridization