Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00391 ATGATGAGAGTGGGGTTGGGTAATGGGCAAGCATGTCCTCAGGCTCAGGAAGTGGTGTCATGGAAATTGAAAGACGAATTAGTTAGAATTAGAATGGAGAGTCGGGCTCTAACAAAACAAGGGGAGCGATTTCTGACCAAAATAAGCATCTCTTCCTCTTCCTCTTCCCACAATCTCATTCGAAGATTCGTACAAGGTTCCCCCAAATCGGTGGTTCTCACCACTCTCTCCCACCTCCTCTCTCCCTCCACCAATCCCCACCTCTCTCCCCTCGCCCTCCCCCTCTACACCAGAATCACCCTAGCCCCATGGTTCTGTTGGAACCCCACCACCGCAGCCCACCTCGCCGCCCTCCTCCACCAATTAGGCCACCACGCCCAATCCCAAACCCTCGTTTCCGATGCCACTTCTAGGCTCCAATCTTCCACGCGCCAACTCGTTCTTTTCTACGGCAAACTTATGGAGTCCCACTCCAAGCGAGGTTCACTATCCGGCTTCCAACTCGCCTATGCTTACCTCCACAAGCTTCTCTGCACTTGCTCCTCGGTTTACGTGAAACGCCGGGCCTACGAGTACATGGTCAGTGGGCTGTGTGCAATGGATAGGCCTGGTGAGGCTGAGGATTTGGCTCTTGGGCTTGGGCTTGGGCTTGAACCTTCGGGTTTCGAATTGAAGTTCATTGTGTATGGATACGGAAGGTTGGGGTTGTTTGAGGATATGCGTAGAGTGGTAGATGAAATGGAGAAGGGAGGGTTTGTTGTTGACACGGTTTGTTACAACATGGTTCTTTCGTCGTACGGCATTCACGGGGAGCACGAGGATATGGTGGGCTGGCTTCGGAGGATGAGGAATTCTGGGGTTCCGTTTTCTGTGAGGACATACAATTGCGTCACCAATTGTTGCCCCAGTGTGATGAGAATGGGGGAGTTGCATGAATTGGAAGGAGGGGAGAGAATGTTGGTGAGGGAGTTGTTGGGGTGTCGTCGGATATTGGAGGAGGTGATGCTGTGGGATTCCTTGGAGGTCAAGTTAGATTTGCATGGTTTTCATTTGCCTGCCGCCTATTTGATTGTGTTGCTCTGGCTGGACGAGATGCGAACAAGGTTCCAACATCAAGTTCCTCGCCAAGTTACGCTTGTTTCTGGCTCCGGAAACCATAGCACTGTTAGGGGAGAGTCGCCTGTCAGACTGCTGGTTCAAAAGATGATGCTCAAAATGGACAGTCCGCTCAAACTTGATAGGAACAACAATGGCTGCTTCGTTGCCAAAGGGAAACCCTTCAAAAACTGGTTATGTCAACTGAGGAACATTCCAATACAATCAATATTAATTTAA 1335 0.5056 MMRVGLGNGQACPQAQEVVSWKLKDELVRIRMESRALTKQGERFLTKISISSSSSSHNLIRRFVQGSPKSVVLTTLSHLLSPSTNPHLSPLALPLYTRITLAPWFCWNPTTAAHLAALLHQLGHHAQSQTLVSDATSRLQSSTRQLVLFYGKLMESHSKRGSLSGFQLAYAYLHKLLCTCSSVYVKRRAYEYMVSGLCAMDRPGEAEDLALGLGLGLEPSGFELKFIVYGYGRLGLFEDMRRVVDEMEKGGFVVDTVCYNMVLSSYGIHGEHEDMVGWLRRMRNSGVPFSVRTYNCVTNCCPSVMRMGELHELEGGERMLVRELLGCRRILEEVMLWDSLEVKLDLHGFHLPAAYLIVLLWLDEMRTRFQHQVPRQVTLVSGSGNHSTVRGESPVRLLVQKMMLKMDSPLKLDRNNNGCFVAKGKPFKNWLCQLRNIPIQSILI 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00391 444 Gene3D Tetratricopeptide repeat domain 108 323 IPR011990 GO:0005515
Pste4g00391 444 ProSiteProfiles Smr domain profile. 344 425 IPR002625 -
Pste4g00391 444 SUPERFAMILY SMR domain-like 342 423 IPR036063 -
Pste4g00391 444 SMART SMR_2 341 425 IPR002625 -
Pste4g00391 444 Pfam PPR repeat 228 252 IPR002885 -
Pste4g00391 444 Pfam PPR repeat 257 287 IPR002885 -
Pste4g00391 444 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Pste4g00391 444 NCBIfam pentatricopeptide repeat 257 288 IPR002885 -
Pste4g00391 444 NCBIfam pentatricopeptide repeat 227 256 IPR002885 -
Pste4g00391 444 Gene3D - 342 423 IPR036063 -
Pste4g00391 444 PANTHER OS03G0856100 PROTEIN 319 433 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00391 174 309 Glycosyltransferase AT1G05670 28.058 8.45e-08 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00391 4 3019412 3020746 Pste4g00391 4 3019412 3020746 ECH