Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0184 ATGACATTTCAACTCCAAATTCAACAATGTCCTCTTCTTCTTCCTCCTCCTCAACTACGTAACAGTAACAGTAACAGTAACAGTAACAGTAGTATTCGCTGCACACTTACAAAACAAGGCCAACGATTTCTCACTAAACTCACCACCACCAACACCAACACCGATAACCTCATCAAAAAATTCGTTCAATCTTCCCCCAAATCCGTACTCCTATCCACTCTCACTCACCTCATCTCTCCCAACAACAACAACAACCTCTCTTCTCTCGCTCTTCCCCTATACACAAGAATCACCGAATCACCATGGTACACGTGGAACCCAACCATCATCGCCGATCTCATCACCCTCCTCCACAAACACCAACTCTACACCGAATCCCAAACCCTAATTTCAGAAGCAATTTCAAAACTCAACAACAGAGAACGTGAACTTGTTCAATTCTACTCCAAACTCTTGGAATCACACTCCAAACGCGCTTCTCAAACTGGATTCGATTCAGCTTATTTCTCCCTCAATAACTTACTTCACACTTCTTCATCACTTTATGTTAAACGCAGAGCTTATGAATCCATGGTTAGTGGATTGTGTGCAATGGATAAGCCACGTGAGGCTGAGAATTTGATTCAGGATTTTAAACATGGTGGTCACAACAAGATTCAAATTCAACCTTCTGGTTTTGAATTTAAGTCTATTTTGTATGGATATGGAAGATTAGGGTTGTTTCATGATTTACTCAGAGTTGTTGATCAAATGGAGAAAAATGGGTTTGTTATTGATACTGTTTGTTACAACATGGTTCTTTCGAGTTTTGGAATTCATGGGGAGTATGTGGAAATGGTTTCTTGGCTTAGAAGGATGAGGAATTCCGGTGTTCCGTTCTCTATCAGAACTTATAATTCGGTTTCGAATTCTTGTCCGACGATTATGGGGAAGGTGGTGGAGTTGAATGATTTCGCATTGTCGATTGATGAGTTGTTAAATGTGGGGTTGGAAGGTGGGGAAGCTATGGTGGTTAAGGAGTTGCTTTCGTGTTCTGCGATTTTCGATGAGGTAATGGTGTGGGATTCTAAAGAGGTTAAGTTGGATTTGCATGGATTTCATTTGGGTTCAGCTTATTTGGTTATGTTACTTTGGTTGGAGGAGATACAAAAGAGGTTGTTGAATGCTTCTAATTATGAGATTCCTGCTGAAATCACTGTGGTTTGTGGGGTAGGAAAGCATAGCAATGTGAGGGGAGAATCGCCGGTTAAAGTATTGGTTAAAGAGATGATGACGAAGATGAAAGGTCCACTAAGGATCGATAGGAAGAACAACGGCTGCTTTATCGCTAAAGGTAAAACTGTTAAAATTTGGTTATGTGAATTGAGGAAGCCACAATTTCATTGA 1386 0.4062 MTFQLQIQQCPLLLPPPQLRNSNSNSNSNSSIRCTLTKQGQRFLTKLTTTNTNTDNLIKKFVQSSPKSVLLSTLTHLISPNNNNNLSSLALPLYTRITESPWYTWNPTIIADLITLLHKHQLYTESQTLISEAISKLNNRERELVQFYSKLLESHSKRASQTGFDSAYFSLNNLLHTSSSLYVKRRAYESMVSGLCAMDKPREAENLIQDFKHGGHNKIQIQPSGFEFKSILYGYGRLGLFHDLLRVVDQMEKNGFVIDTVCYNMVLSSFGIHGEYVEMVSWLRRMRNSGVPFSIRTYNSVSNSCPTIMGKVVELNDFALSIDELLNVGLEGGEAMVVKELLSCSAIFDEVMVWDSKEVKLDLHGFHLGSAYLVMLLWLEEIQKRLLNASNYEIPAEITVVCGVGKHSNVRGESPVKVLVKEMMTKMKGPLRIDRKNNGCFIAKGKTVKIWLCELRKPQFH* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0184 461 TIGRFAM PPR: pentatricopeptide repeat domain 230 260 IPR002885 -
Tpr1g0184 461 TIGRFAM PPR: pentatricopeptide repeat domain 261 292 IPR002885 -
Tpr1g0184 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Tpr1g0184 461 PANTHER ATPASE EXPRESSION PROTEIN 3 19 454 - -
Tpr1g0184 461 SUPERFAMILY SMR domain-like 359 444 IPR036063 -
Tpr1g0184 461 Gene3D - 343 444 IPR036063 -
Tpr1g0184 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Tpr1g0184 461 PANTHER OS02G0120000 PROTEIN 19 454 - -
Tpr1g0184 461 Pfam PPR repeat 187 213 IPR002885 -
Tpr1g0184 461 Pfam PPR repeat 261 291 IPR002885 -
Tpr1g0184 461 Pfam PPR repeat 229 256 IPR002885 -
Tpr1g0184 461 ProSiteProfiles Smr domain profile. 361 451 IPR002625 -
Tpr1g0184 461 SMART SMR_2 358 446 IPR002625 -
Tpr1g0184 461 Gene3D Tetratricopeptide repeat domain 74 317 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0184 188 304 Glycosyltransferase AT1G05670 26.496 8.38e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0184 - - cam:101506627 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0184 1 1482188 1484074 Tpr1g0184 1 1482188 1484074 ECH