Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00185 ATGAGAGTGGGATTGGGGAATGGGCAGCAGCAGTGTCTATCATGGAAGTTGAAACAACCTCGTCCCCAATTTCAAGCGCGTCTAGTTAGAATTAGAATGGAGAGTATTACGCTAACGAAACAGGGGCAGCGATTTCTGACGAAGCTAACGACCTCCTCCGCCACCGCCGACAACCTCATTCGAAGATTCGTATTAGGCTCACCCAAATCCGTCGTTCTCACCACTCTCTCCCACCTCCTCTCTCCCTCCACCTCCTATCCCCAACTCTCCTCCCTCGCCCTCCCCCTGTACTCAAGAATGAGCGAAGCCCCATGGTTCAGTTGGAACCCCAGCACCGTGGCCGAACTCGCCGCGCTCCTCCACAAACTGGGCCACCACGCCCAATCCCAAGCCCTCATTTCCGAGGCCACTTCCAAGTTACAATCACGCCAACGCGACCTCGTTCTCTTCTACGGCAAACTCATGGACTCACATTCCAAGCGAAACTCCCAAACCGGCTTCGACGTTGCTTATGGTTACCTCCACAACCTTCTCCGCACTTCCTCCTCGCTTCACGTGAAACGCAGGGCCTACGAGTACATGGTGAGTGGGTTATGTGCCATGGACAGGCCTCGTGAGGCCGAGGATTTAGTTCTTGGGCCTCAACCTTCGGGCTTTGAGTTTAAGTCCATTGTGTATGGATACGGAAGGTTGGGTTTGTTTAGCGATATGAATAGAGTGGTGGATGAAATGGAGAAGAGTGGGTTTGTTGTTGACACGGTTTGTTACAACATGGTTCTTTCGACGTATGGTATTCACGGGGAGCACGGGGAGATGGTGTCGTGGCTTCGGAGGATGAGGGATTCGGGTGTTCCGTATTCTGTTAGGACTTACAATTCTGTCTCGAATTGTTGCCCAAGGGTTATGAGAATGACGACGGGGGAGTTGAGTGAATTGGTGTTGTCGATTGAAGAGTTGAAGGAGGGTCTGGAAGGAGGGGAGGGGATGGTGGTGAGGGAGTTGTTGGGGTGTTGTGGGATATTGGAGGAGGTCATGGTGTGGGATTCTCTGGAGGTGAAGTTGGATTTGCATGGATTTCACTTGGCTTCGGCTTATTTGATTGTGTTGCTTTGGTTGGACGAGATGCGAAGACGGTTGAATGATTCCAATTATGGAGTTCCTGCGCAAGTTACCGTGGTTTGTGGGTTGGGAAAGCATAGCATTGTCAGAGGAGAGTCGCCGGTGAGAGTGTTGGTTCAGAAGATGATGCTGAATATGGCAAGTCCCTTGAAGGTGGATACCAAGAACAATGGCTGCTTCATTGCCAAAGAAAGATACCCCTCATATCCAGTGGCCATCAATCGTCTTCTGTACTGTAGTTCCCATCGCAGAATGTGCAAGAACAAATATGCTAGAACTGCTAAATCCTTTTAA 1413 0.5067 MRVGLGNGQQQCLSWKLKQPRPQFQARLVRIRMESITLTKQGQRFLTKLTTSSATADNLIRRFVLGSPKSVVLTTLSHLLSPSTSYPQLSSLALPLYSRMSEAPWFSWNPSTVAELAALLHKLGHHAQSQALISEATSKLQSRQRDLVLFYGKLMDSHSKRNSQTGFDVAYGYLHNLLRTSSSLHVKRRAYEYMVSGLCAMDRPREAEDLVLGPQPSGFEFKSIVYGYGRLGLFSDMNRVVDEMEKSGFVVDTVCYNMVLSTYGIHGEHGEMVSWLRRMRDSGVPYSVRTYNSVSNCCPRVMRMTTGELSELVLSIEELKEGLEGGEGMVVRELLGCCGILEEVMVWDSLEVKLDLHGFHLASAYLIVLLWLDEMRRRLNDSNYGVPAQVTVVCGLGKHSIVRGESPVRVLVQKMMLNMASPLKVDTKNNGCFIAKERYPSYPVAINRLLYCSSHRRMCKNKYARTAKSF 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00185 470 NCBIfam pentatricopeptide repeat 254 285 IPR002885 -
Pumo3g00185 470 NCBIfam pentatricopeptide repeat 223 253 IPR002885 -
Pumo3g00185 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Pumo3g00185 470 PANTHER OS03G0856100 PROTEIN 93 437 - -
Pumo3g00185 470 SUPERFAMILY SMR domain-like 352 435 IPR036063 -
Pumo3g00185 470 Gene3D Tetratricopeptide repeat domain 88 324 IPR011990 GO:0005515
Pumo3g00185 470 ProSiteProfiles Smr domain profile. 354 438 IPR002625 -
Pumo3g00185 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Pumo3g00185 470 SMART SMR_2 351 438 IPR002625 -
Pumo3g00185 470 Gene3D - 353 436 IPR036063 -
Pumo3g00185 470 Pfam PPR repeat 222 249 IPR002885 -
Pumo3g00185 470 Pfam PPR repeat 254 284 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00185 46 296 Glycosyltransferase AT1G05670 23.256 1.06e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00185 - - gmx:100805233 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00185 3 2362700 2365714 Pumo3g00185 3 2362700 2365714 ECH