Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g05001 ATGACAACATTTCAACTCCAAATTCAACAATGTCCTCTTCTTCCTCAACTCCAAACCCAACTAGTACGTAACAACGCTATTCGCTGCACACTTACAAAACAAGGCCAACGATTTCTCACTAAactcaccaccaccaccaacaacaacaccGATACCCTCATCAGAAAATTCGTTCAATCCTCACCCAAATCAGTACTCCTCTCCACTCTCACTCACCTCCTCTCCCCCACTCcccaccacaacaacaacaacctctcCTCTCTCGCTCTCCCCCTCTACACAAGAATCAGCGAATCACAATGGTACACGTGGAACCCAACCATCATCGCCGATCTCATCACTCTCCTCCACAAACTCCAACTCTACACAGAAtaccaaaccctaatttcagaAGCaatttcaaaactcaacaacCGAGAACGTGAACTTGTTCAATTCTACTCTAAACTCTTGGAATCACATTCCAAACGTGCTTCTCAAACTGGATTCGATTCAGCTTATTTCTCCCTCAACAACTTACTTCACACTTCATCATCACTTTATGTTAAACGCAGAGCTTATGAATCTATGGTTAGTGGTTTGTGTGCAATGGATAAGCCTCGTGAGGCTGAGAATTTGATTCAGGGTTTCAAAGATGGTGATGAGAAGAAGATTCAAATTCAACCTTCTGGTTTTGAATTCAAGTCTATTTTGTATGGATATGGAAGATTAGGTTTGTTTCATGATTTGCTTAGAGTTGTTGATCAAATGGAGAAAAATGGGTTTGTTATTGATACTGTTTGTTACAACATGGTTCTTTCGAGTTTTGGAATTCATGGGGAGTATGTGGAAATGGTTTCTTGGCTTAGAAGGATGAGGAATTCGGGTGTTCCGTTCTCTATAAGAACTTATAATTCGGTTTTGAATTCTTGTCCGACGGTAATGAGGAAGGTGGTGGAGTTGAATGATTTGGCATTGTCGATTGACGAGTTGTTGAATGCGGGGTTGGAAGGTGGGGAAGCTATGGTGGTTAAGGAGTTGCTTTCGTGTTCTGTGATTTTTGATGAGGTTATGGTGTGGGATTCTAAAGAGGTTAAGTTGGATTTGCATGGATTTCATTTGGGTTCAGCTTATTTGGTTATGTTGCTTTGGTTGGAGGAGATGCACAAGAGGTTGTTGAATGCTTCAAATTATGAGATTCCTGCTGAAATCACTGTGGTTTGTGGGGTAGGAAAGCATAGCAATGTGAGGGGAGAATCGCCGGTTAAAGTATTGGTTAaagagatgatgatgaagatgaaaggTCCACTAAGGATTGATAGGAAGAACAACGGCTGCTTTATTGCAAAGGGTAAAACTGTCAAAATTTGGTTATGTGAATTGAGGAAGCCACAATTTCATTGA 1383 0.3767 MTTFQLQIQQCPLLPQLQTQLVRNNAIRCTLTKQGQRFLTKLTTTTNNNTDTLIRKFVQSSPKSVLLSTLTHLLSPTPHHNNNNLSSLALPLYTRISESQWYTWNPTIIADLITLLHKLQLYTEYQTLISEAISKLNNRERELVQFYSKLLESHSKRASQTGFDSAYFSLNNLLHTSSSLYVKRRAYESMVSGLCAMDKPREAENLIQGFKDGDEKKIQIQPSGFEFKSILYGYGRLGLFHDLLRVVDQMEKNGFVIDTVCYNMVLSSFGIHGEYVEMVSWLRRMRNSGVPFSIRTYNSVLNSCPTVMRKVVELNDLALSIDELLNAGLEGGEAMVVKELLSCSVIFDEVMVWDSKEVKLDLHGFHLGSAYLVMLLWLEEMHKRLLNASNYEIPAEITVVCGVGKHSNVRGESPVKVLVKEMMMKMKGPLRIDRKNNGCFIAKGKTVKIWLCELRKPQFH 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g05001 460 Gene3D Tetratricopeptide repeat domain 79 354 IPR011990 GO:0005515
Tsu01g05001 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Tsu01g05001 460 PANTHER ATPASE EXPRESSION PROTEIN 3 18 453 - -
Tsu01g05001 460 PANTHER OS02G0120000 PROTEIN 18 453 - -
Tsu01g05001 460 SUPERFAMILY SMR domain-like 358 443 IPR036063 -
Tsu01g05001 460 Gene3D - 358 443 IPR036063 -
Tsu01g05001 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Tsu01g05001 460 TIGRFAM PPR: pentatricopeptide repeat domain 229 259 IPR002885 -
Tsu01g05001 460 TIGRFAM PPR: pentatricopeptide repeat domain 260 291 IPR002885 -
Tsu01g05001 460 Pfam PPR repeat 186 208 IPR002885 -
Tsu01g05001 460 Pfam Pentatricopeptide repeat domain 245 304 IPR002885 -
Tsu01g05001 460 SMART SMR_2 357 445 IPR002625 -
Tsu01g05001 460 ProSiteProfiles Smr domain profile. 360 450 IPR002625 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g05001 Tsu-Chr1 56768523 56770212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g05001 105 341 Glycosyltransferase AT1G05670 23.506 8.95e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g05001 - - cam:101506627 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g05001 01 56768523 56770212 Tsu01g05001 01 56768523 56770212 ECH