Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03431 ATGGATAGGCCTCGTGAGGCTGAGGATTTGGTTCAAGATTTGAGAGATAATGGAGGAGGGGTTCTACCTTCAGCTTTTGAGTTTAAGTCTGTTGTTTTGGGGTATGGAAGATTGGGTTTGTTTCAAGATTTGCATAGAGTTTTGGATCAAATGGAGAGAAGTGGGTTTGTTATTGATACAGTTTGTTCCAACATGGTTCTTTCGACTTATGGCATTCATGGGGAGTTTGTGGAAATGGTTTCCTGGCTTCGGAGGATGAGAGATTCTGGTGTCCCATTCTCTGTCAGAACCTACAATTCTGTCTCAAATTATTGCCCAACCATTATGAGGAAGATGGTGGAATTGAAGGACTTGCCGTTGTCAATTGAAGAGTTGAATGCTAGTTTGGAAGGAGGGGAGGGTATGGTAGTTAGGGAGTTACTAACTTCTATAATTTTGGAGGAGATAATGGTGTGGGATTCTTTGGAGGCAAAATTGGATTTGCATGGATTTCACTTCGGTTCATCTTATTCAATTATGTTACTTTGGTTGGAGGAGATGCAAAGAAGGTTGAATGACTAA 561 0.41 MDRPREAEDLVQDLRDNGGGVLPSAFEFKSVVLGYGRLGLFQDLHRVLDQMERSGFVIDTVCSNMVLSTYGIHGEFVEMVSWLRRMRDSGVPFSVRTYNSVSNYCPTIMRKMVELKDLPLSIEELNASLEGGEGMVVRELLTSIILEEIMVWDSLEAKLDLHGFHFGSSYSIMLLWLEEMQRRLND* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03431 186 PANTHER OS03G0856100 PROTEIN 2 110 - -
Rops6g03431 186 NCBIfam pentatricopeptide repeat 31 60 IPR002885 -
Rops6g03431 186 NCBIfam pentatricopeptide repeat 64 92 IPR002885 -
Rops6g03431 186 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Rops6g03431 186 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 24 58 IPR002885 -
Rops6g03431 186 Pfam PPR repeat 63 91 IPR002885 -
Rops6g03431 186 Pfam PPR repeat 30 56 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03431 Rops-Chr6 58969622 58970182 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03431 - - mtr:11446726 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03431 6 58969622 58970182 Rops6g03431 6 58969622 58970182 ECH