Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08028 ATGACGACGACGACGACGACGACGATGGGATTCCAACTCCAAATCCAGCAATGTCATCGCGAGGTACTGTCATGGAAATGTAAGCAACCTCTGTCTCTCTCCCAAGCACGATTTAGGATGGAGAGTTGTACACTAACCAAACAAGGGCAGCGATTTCTGACAAAGCTAACCACCACAGACGCCACCGCCGACAACCTCATCCGAAGATTCGTACAAGGCTCTCCCAAATCCGTTGTTCTTTCCACTCTCTCACACCTCCTCTCTCCTTCTACCTCTTACCCACACCTCTCTTCTCTTGCCTTCCCTCTTTATTCAAGAATCACCGAAGCACCTTGGTTCACTTGGAACCCCACCATTGTGGCAGACCTCGTTGCGCTTCTCCACAAACAGGGTCGCCACGAAGAAGCTGAAACTCTGATTTCTGCGGCCACTTCCAAGTTGGAATCTCGCAACCGAGAGCTTGTTCTTTTCTACGGTAAACTGTTGGAGTCACACTCCAAGCGAAGTTCACAAACAGGGTTCGATGTTGCTTATTGTTACCTGAACCAACTCCTTCACACTTCGTCCTCTGTTTACATTAAACGCAGGGCTTATGAGTATATGGTTAGTGGGTTGTGTGCTATGGATAGGCCTCGTGAGGCTGAGAATTTGGTTCAAGATTTGAGAGATAATAATGGAGGGCTTCAACCTTCAGCTTTTGAGTTGAAGTCCATTGTGTATGGTTATGGAAGATTGGGTTTGTTTCAAGACTTGCTCAGAGTTGTAGATCAAATGGAGAGAAGTGGGTTTGTTATTGACACAGTTTGCTCCAATATGATTCTTTCAACTTATGGCATTCATGGGCAGCATGTGGAAATGGTTTCCTGGCTTCGGAGGATGAGGGATTTGGGGGTTCCCTTCTCTATCAGAACCTACAATTCTGTCACAAATTCTTGCCCAACGATCATGAGGACGATGGTGGAATTGAAGGGCTTGGCATTGTCAATTGAAGAGTTGAATGAGAGCTTGGAAGGAGGGGAAGCTATGGTAGTTAGGGAGTTACTAGCTTCTTCTGTGATATTGGAGGAGGTGATGGTGTGGGAGTCTTTGGAGGCAAAGTTGGATTTGCATGGATTTCACTTGGGTTCATCCTATTTGATTATGTTACTCTGGTTAGAGGAGATGCAACGAAGGTTGAATGACTCAAATTATGGAGTTCCTGCAGAGATCACAGTGGTTTGTGGGTCAGGGAAGCATAGCAGTGTTAGAGGAGAATCACCGGTCAAAGTATTGGTTAAAGAGATGATGGTGAATATGAAAGGTCCACTGAGGATTGATAGGAAGAACAATGGCTGCTTTGTTGCCAAAGGTAAAGCTGTAAAAAATTGGTTATGTGAATTAAGAAAGCCATGA 1392 0.454 MTTTTTTTMGFQLQIQQCHREVLSWKCKQPLSLSQARFRMESCTLTKQGQRFLTKLTTTDATADNLIRRFVQGSPKSVVLSTLSHLLSPSTSYPHLSSLAFPLYSRITEAPWFTWNPTIVADLVALLHKQGRHEEAETLISAATSKLESRNRELVLFYGKLLESHSKRSSQTGFDVAYCYLNQLLHTSSSVYIKRRAYEYMVSGLCAMDRPREAENLVQDLRDNNGGLQPSAFELKSIVYGYGRLGLFQDLLRVVDQMERSGFVIDTVCSNMILSTYGIHGQHVEMVSWLRRMRDLGVPFSIRTYNSVTNSCPTIMRTMVELKGLALSIEELNESLEGGEAMVVRELLASSVILEEVMVWESLEAKLDLHGFHLGSSYLIMLLWLEEMQRRLNDSNYGVPAEITVVCGSGKHSSVRGESPVKVLVKEMMVNMKGPLRIDRKNNGCFVAKGKAVKNWLCELRKP. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08028 463 Pfam PPR repeat 198 224 IPR002885 -
Seca8g08028 463 Pfam PPR repeat 270 298 IPR002885 -
Seca8g08028 463 Pfam PPR repeat 237 263 IPR002885 -
Seca8g08028 463 SUPERFAMILY SMR domain-like 364 449 IPR036063 -
Seca8g08028 463 Gene3D - 369 449 IPR036063 -
Seca8g08028 463 ProSiteProfiles Smr domain profile. 367 451 IPR002625 -
Seca8g08028 463 PANTHER OS03G0856100 PROTEIN 103 459 - -
Seca8g08028 463 SMART SMR_2 364 451 IPR002625 -
Seca8g08028 463 NCBIfam pentatricopeptide repeat 237 267 IPR002885 -
Seca8g08028 463 Gene3D Tetratricopeptide repeat domain 97 368 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08028 Seca-Chr8 177827203 177829195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08028 198 310 Glycosyltransferase AT1G05670 27.434 3.61e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08028 - - mtr:11446726 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g08028 8 177827203 177829195 Seca8g08028 8 177827203 177829195 ECH