Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00171 ATGATGAATGGCTTACAGAGTCCTCACCAAGGGCTGTCATGGAGATGGAAACAACGTGCTGTCCCAGTTACAACCATTAAAATGGAGACTACCACGCTAACCAAACAAGGACAACGATTTCTGACCAAGTTAACCACCTCCTCCGCCGCCACCGACAACCTCATCCGAAGATTCGTCCAAGGTTCTCCCAAATCTGTCGTTCTCACCACTCTCTCACACCTCCTCTCTCCCACCACCTCCTATCCACAACTCTCAACCCTCGCGCTCCCCCTCTACGGAAGAGCCAGCCAAGCCCCGTGGTTCATATGGAACTCCACCACCGTGGCCGAACTCGCCGCGCTCCTCCACAAACTCGGCCACCGGGCCCAATCCGAAGCCCTGATTTCCGAGGCCATTTGCAAGCTACAATCTCGCAAACGCGAACTCGTTGTCTTCTACGGCAAACTCGCGGAAGCGTACTCCAAACGAAAATCCGAAACCGGCTTCGACGTGGCTTACGGTTACCTCAACAACCTTCTGCGCACATCCGAATCGGTGCACGTGAAACGCAGGGCCTACGAGTACATGGTGAGTGGGCTGTGTTCCATGGACAGGCCCCGTGAGGCAGAGGATTTAGTTATTGGGCCTGCGGCTGGGCTTGGGCTTAAACCCTCGGGCTTTGAATTGAAGTCAATTGTGTACGGATACGGCAGGGTGGGGTTGTTTGAGGATATGCGGAGAGTGGTGGATGAAATGGAGAAGAGAGGGTTTGTGGTTGACACGGTATGTTGCAACATGGTTGTTTCGGCTTACGGGGTTCACGGGGAGCACGTGGAAATGGCGACGTGGCTTCGGAAAATGAGGGATTCAGGGGTTCCGTTTTCCGTCAGGACATACAACTCCGTTACGAATTGTTGCCCTAGGGTTTTGAGAATGGTGGGGGGATTGAGCGAATTGGCGTTGTCGATGGAAGAATTGAATGAGGGTTTGGACGGAGGGGAGGGAATGGTGGTGAGGGAGTTGTTGGGGTGTAGTGGGATTTTGGAGGAGGTGATGGTGTGGGAGGCGTTGGAGATGAAGCTGGATCTACATGGTTTTCACTTGGGTGGGGCTTATTTGGTGGTTTTGGTTTGGTTGGAGGAGATGTGGAAAAGGTTGAATGGGTTGAATTGTGGGGTTCCGGCGGAAGTTACGGTGGTTTGTGGGTTGGGAAATCACAGCAGTGTTCGAGGGGAATCGAAGTTGAGAGTGCTGGTGCAGAAGATGATGGTGAAAATGGGAAGTCCGTTGAAGGTTGATAGGAAGAACAATGGGTGCTTTATTGCAAAAGGAAAAGCGGTTCAAAATTGGTTGTGTGAAATGAGGAAGGCACCTCTGAGTGGGTCTGCTTCTCTGTGA 1377 0.5243 MMNGLQSPHQGLSWRWKQRAVPVTTIKMETTTLTKQGQRFLTKLTTSSAATDNLIRRFVQGSPKSVVLTTLSHLLSPTTSYPQLSTLALPLYGRASQAPWFIWNSTTVAELAALLHKLGHRAQSEALISEAICKLQSRKRELVVFYGKLAEAYSKRKSETGFDVAYGYLNNLLRTSESVHVKRRAYEYMVSGLCSMDRPREAEDLVIGPAAGLGLKPSGFELKSIVYGYGRVGLFEDMRRVVDEMEKRGFVVDTVCCNMVVSAYGVHGEHVEMATWLRKMRDSGVPFSVRTYNSVTNCCPRVLRMVGGLSELALSMEELNEGLDGGEGMVVRELLGCSGILEEVMVWEALEMKLDLHGFHLGGAYLVVLVWLEEMWKRLNGLNCGVPAEVTVVCGLGNHSSVRGESKLRVLVQKMMVKMGSPLKVDRKNNGCFIAKGKAVQNWLCEMRKAPLSGSASL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00171 458 Gene3D Tetratricopeptide repeat domain 111 328 IPR011990 GO:0005515
Vian3g00171 458 ProSiteProfiles Smr domain profile. 354 438 IPR002625 -
Vian3g00171 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Vian3g00171 458 Pfam PPR repeat 224 250 IPR002885 -
Vian3g00171 458 Pfam PPR repeat 255 285 IPR002885 -
Vian3g00171 458 Gene3D - 353 436 IPR036063 -
Vian3g00171 458 SMART SMR_2 351 438 IPR002625 -
Vian3g00171 458 NCBIfam pentatricopeptide repeat 255 286 IPR002885 -
Vian3g00171 458 NCBIfam pentatricopeptide repeat 224 254 IPR002885 -
Vian3g00171 458 SUPERFAMILY SMR domain-like 351 436 IPR036063 -
Vian3g00171 458 PANTHER OS03G0856100 PROTEIN 89 446 - -
Vian3g00171 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00171 41 297 Glycosyltransferase AT1G05670 23.643 1.85e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00171 - - gmx:100805233 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00171 3 1395114 1396569 Vian3g00171 3 1395114 1396569 ECH