Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03993 ATGATGAATGGCTTACAGTGTCCTCACCAGGGGCTGTCATGGAGATGGAAACAACGTGGTTTCCCAGTTACAACCATTAAAATGGAGACTTCCACGCTAACCAAACAAGGACAACGATTTCTGACCAAGCTAACCACCTCCGCCGCCGCCACCGACAACCTCATCCGAAGATTCGTCCAAGGTTCTCCCAAATCTGTTGTTCTCACCACTCTCTCACACCTCCTCTCTCCCTCCACCTCCTACCCACAACTCTCTTCCCTCGCGCTCCCCCTCTACGGAAGAGCGAGCCAAGCCCCGTGGTTCACCTGGAACTCCACCACCGTCGCCGAGCTCGCCGCGCACCTCCACAAACTCGGCCACCAGGCCCAATCCGAAGCCCTGGTTTCCGAGGCCATTTCCAAGCTACAATCTCGCAAACGCGAACTCGTTGTCTTCTACGGCAAACTGGCGGAAGCATACTCGAAACGAAAATCCGAAACCGGCTTCGACGTGGCTTACAGTTACCTCAACAACCTTCTCCGCACATCCGAATCGGTGCACGTGAAACGCAGGGCCTACGAGTACATGGTGAGTGGGCTGTGTTCCATGGACAGGCCGCGTGAGGCAGAGGATTTAGTTATTGGGCCTGCGGCTGGGCTCGGGCTTAAACCCTCGGGCTTTGAATTGAAGTCAATTGTGTACGGATACGGAAGGGTGGGGTTGTTTGAGGATATGCGGAGGGTTGTGGAGGAAATGGAGAAGAGAGGGTTTGTGGTTGACACGGTATGTTGCAACATGGTTGTTTCGGCTTACGGGGTTCACGGGGAGCACGTGGAAATGGTGACGTGGCTTCGGAGGATGAGGGATTCAGGGGTTCCGTTTTCCGTGAGGACTTACAACTCCGTTTCGAATTGTTGCCCGGAGGTTTTGAGAATGGTGGGGGGGTTGAGCGAATTGGCGTTGTCGATGGAGGAATTGAATGAGGGTTTGGAAGGAGGGGAGGGAATGGTGGTGAGGGAGTTGATGGGGTGTAGTGGGATTTTGGAGGAGGTGATGGTGTGGGAGGCGTTGGAGGTGAAGCTGGATCTGCATGGGTTTCACGTGGGTGGGGCTTATTTGGTGGTTTTGGTTTGGTTGGAGGAGATGTGGAGAAGGTTGAATGGGTTGAATTGTGGGGTACCGGCGGAAGTTACGGTGGTTTGTGGGTTGGGAAATCACAGCAGTGTTCGAGGGGAATCGAAGGTGAGGGTGCTGGTGCAGAAGATGATGGTGAAAATGGGAAGTCCGTTGAAGGTTGATAGGAAGAACAACGGGTGCTTTATTGCAAAAGGAAAAGCTGTTCAAAATTGGTTGTGTGAAATGAGGAAGGCACCTCTGAGTGGGTCTGCTTCACAGTGA 1377 0.5345 MMNGLQCPHQGLSWRWKQRGFPVTTIKMETSTLTKQGQRFLTKLTTSAAATDNLIRRFVQGSPKSVVLTTLSHLLSPSTSYPQLSSLALPLYGRASQAPWFTWNSTTVAELAAHLHKLGHQAQSEALVSEAISKLQSRKRELVVFYGKLAEAYSKRKSETGFDVAYSYLNNLLRTSESVHVKRRAYEYMVSGLCSMDRPREAEDLVIGPAAGLGLKPSGFELKSIVYGYGRVGLFEDMRRVVEEMEKRGFVVDTVCCNMVVSAYGVHGEHVEMVTWLRRMRDSGVPFSVRTYNSVSNCCPEVLRMVGGLSELALSMEELNEGLEGGEGMVVRELMGCSGILEEVMVWEALEVKLDLHGFHVGGAYLVVLVWLEEMWRRLNGLNCGVPAEVTVVCGLGNHSSVRGESKVRVLVQKMMVKMGSPLKVDRKNNGCFIAKGKAVQNWLCEMRKAPLSGSASQ 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03993 458 Gene3D Tetratricopeptide repeat domain 88 324 IPR011990 GO:0005515
Viun7g03993 458 NCBIfam pentatricopeptide repeat 224 254 IPR002885 -
Viun7g03993 458 NCBIfam pentatricopeptide repeat 255 286 IPR002885 -
Viun7g03993 458 Pfam PPR repeat 255 285 IPR002885 -
Viun7g03993 458 Pfam PPR repeat 224 250 IPR002885 -
Viun7g03993 458 ProSiteProfiles Smr domain profile. 354 438 IPR002625 -
Viun7g03993 458 SMART SMR_2 351 438 IPR002625 -
Viun7g03993 458 PANTHER OS03G0856100 PROTEIN 87 446 - -
Viun7g03993 458 SUPERFAMILY SMR domain-like 352 436 IPR036063 -
Viun7g03993 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Viun7g03993 458 Gene3D - 352 436 IPR036063 -
Viun7g03993 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03993 41 297 Glycosyltransferase AT1G05670 23.643 9.28e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03993 - - gmx:100805233 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03993 7 39488665 39491686 Viun7g03993 7 39488665 39491686 ECH